Difference between revisions of "Installed Application Software and Libraries"
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! Software !! Version !!Toolchain !!Install Date (D/M/Y) | ! Software !! Version !!Toolchain !!Install Date (D/M/Y) | ||
|- | |- | ||
| | | ncbi-genome-download || 0.3.1 || GCCcore/8.3.0 || 27/04/2023 | ||
|- | |- | ||
| | | [[illumina-utils 2016 | illumina-utils]] || 2.12 || intel/2019b || 15/03/2023 | ||
|- | |- | ||
| | | [[KrakenUniq 2016 | KrakenUniq]] || 1.0.3 || GCCcore, intel & gompi || 14/03/2023 | ||
|- | |- | ||
| | | [[KaHIP 2016 | KaHIP]] || 3.14 || gimkl & gompi || 06/03/2023 | ||
|- | |- | ||
| | | [[ Kaiju 2016 | Kaiju]] || 1.9.2 || GCCcore/8.3.0 || 28/02/2023 | ||
|- | |- | ||
| | | [[FSL 2016 | FSL]] || 6.0.6.2 || SYSTEM || 21/02/2023 | ||
|- | |- | ||
| | | [[PyTorch 2016 | PyTorch]] || 1.13.1 || conda || 17/02/2023 | ||
|- | |- | ||
| | | [[OpenFOAM 2016 | OpenFOAM]] || v2112 || gimkl/2019b & foss/2019b || 14/02/2023 | ||
|- | |- | ||
| | | CONCOCT || 1.1.0 || foss/2019b || 07/2023 | ||
|- | |- | ||
| | | [[Julia 2016 | Julia]] || 1.8.5 & 1.6.7-LTS || SYSTEM || 03/02/2023 | ||
|- | |- | ||
| | | CheckM || 1.1.10 || foss/2019b || 03/02/2023 | ||
|- | |- | ||
| MetaBAT || 2.15 || gompi/2019b || 03/02/2023 | |||
| | |||
|- | |- | ||
|} | |} | ||
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===/cm/shared/uniol/modules/bio=== | ===/cm/shared/uniol/modules/bio=== | ||
*[[ABySS 2016 | ABySS]]/2.3.5-foss-2019b | *[[ABySS 2016 | ABySS]]/2.3.5-foss-2019b | ||
*anvio/7.1-intel-2019b-Python-3.7.4 | |||
*[[AUGUSTUS 2016 | AUGUSTUS]]/3.2.3-intel-2016b-Python-2.7.12 | *[[AUGUSTUS 2016 | AUGUSTUS]]/3.2.3-intel-2016b-Python-2.7.12 | ||
*[[AUGUSTUS 2016 | AUGUSTUS]]/3.2.3-intel-2018a-Python-2.7.14 | *[[AUGUSTUS 2016 | AUGUSTUS]]/3.2.3-intel-2018a-Python-2.7.14 | ||
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*[[BEDTools]]/2.26.0 | *[[BEDTools]]/2.26.0 | ||
*[[BEDTools]]/2.29.2-GCC-8.3.0 | *[[BEDTools]]/2.29.2-GCC-8.3.0 | ||
*[[BEDTools]]/2.30.0-iccifort-2019b | |||
*[[BLAST]]/2.11.0-Linux_x86_64 | *[[BLAST]]/2.11.0-Linux_x86_64 | ||
*[[BLAST]]/2.2.26 | *[[BLAST]]/2.2.26 | ||
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*[[BamTools]]/2.5.1-foss-2019b | *[[BamTools]]/2.5.1-foss-2019b | ||
*[[BamTools]]/2.5.1-GCC-8.3.0 | *[[BamTools]]/2.5.1-GCC-8.3.0 | ||
*[[BamTools]]/2.5.1- | *[[BamTools]]/2.5.1-iccifort-2019b | ||
*[[BBMap 2016 | BBMap]]/38.61b-foss-2017b | *[[BBMap 2016 | BBMap]]/38.61b-foss-2017b | ||
*[[BCFtools]]/1.3.1 | *[[BCFtools]]/1.3.1 | ||
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*[[Bowtie 1/Bowtie 2|Bowtie2]]/2.3.4.3-foss-2017b | *[[Bowtie 1/Bowtie 2|Bowtie2]]/2.3.4.3-foss-2017b | ||
*[[Bowtie 1/Bowtie 2|Bowtie2]]/2.3.5.1-GCC-6.4.0-2.28 | *[[Bowtie 1/Bowtie 2|Bowtie2]]/2.3.5.1-GCC-6.4.0-2.28 | ||
*[[Bowtie 1/Bowtie 2|Bowtie2]]/2.3.5.1-iccifort-2019b | |||
*[[Bowtie 1/Bowtie 2|Bowtie2]]/2.4.1-GCC-8.3.0 | *[[Bowtie 1/Bowtie 2|Bowtie2]]/2.4.1-GCC-8.3.0 | ||
*[[BRAKER2 2016|BRAKER2]]/2.1.2 | *[[BRAKER2 2016|BRAKER2]]/2.1.2 | ||
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*[[Burrows-Wheeler Aligner|bwa.kit]]/0.7.17 | *[[Burrows-Wheeler Aligner|bwa.kit]]/0.7.17 | ||
*[[Burrows-Wheeler Aligner|BWA]]/0.7.17-GCC-8.3.0 | *[[Burrows-Wheeler Aligner|BWA]]/0.7.17-GCC-8.3.0 | ||
*[[Burrows-Wheeler Aligner|BWA]]/0.7.17-GCC-8.3.0 | |||
*[[Burrows-Wheeler Aligner|BWA]]/0.7.17-GCCcore-8.3.0 | |||
*[[bwa-mem2 2016 | bwa-mem2]]/2.0pre1-GCCcore-6.4.0 | *[[bwa-mem2 2016 | bwa-mem2]]/2.0pre1-GCCcore-6.4.0 | ||
*[[CESAR 2016 | CESAR]]/2.0-intel-2019b_25-08-2020 | *[[CESAR 2016 | CESAR]]/2.0-intel-2019b_25-08-2020 | ||
*CONCOCT/1.1.0-foss-2019b-Python-3.7.4 | |||
*CONCOCT/1.1.0-intel-2019b-Python-3.7.4 | |||
*[[Fiji/Unet 2016 | caffe_unet]]/99bd99795d-intel-2016b-Python-2.7.12 | *[[Fiji/Unet 2016 | caffe_unet]]/99bd99795d-intel-2016b-Python-2.7.12 | ||
*[[canu 2016 | canu]]/1.7-intel-2016b | *[[canu 2016 | canu]]/1.7-intel-2016b | ||
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*[[CellRanger 2016 | CellRanger]]/6.1.1 | *[[CellRanger 2016 | CellRanger]]/6.1.1 | ||
*[[CESAR 2016 | CESAR]]/2.0-intel-2019b_25-08-2020 | *[[CESAR 2016 | CESAR]]/2.0-intel-2019b_25-08-2020 | ||
*Centrifuge/1.0.4-iimpi-2019b | |||
*CheckM/1.1.2-foss-2019b-Python-3.7.4 | |||
*CheckM/1.1.2-intel-2019b-Python-3.7.4 | |||
*CheckM/1.1.10-foss-2019b-Python-3.7.4 | |||
*[[ConnectomeWorkbench 2016 | ConnectomeWorkbench ]]/1.3.2-GCCcore-8.3.0 | *[[ConnectomeWorkbench 2016 | ConnectomeWorkbench ]]/1.3.2-GCCcore-8.3.0 | ||
*[[ConnectomeWorkbench 2016 | ConnectomeWorkbench ]]/1.5.0-GCCcore-8.3.0 | |||
*[[cutadapt]]/1.9.1 | *[[cutadapt]]/1.9.1 | ||
*DendroPy/4.5.2-GCCcore-8.3.0 | |||
*[[discovardenovo 2016 | discovardenovo]]/52488 | *[[discovardenovo 2016 | discovardenovo]]/52488 | ||
*DIAMOND/2.0.9-GCC-8.3.0 | *DIAMOND/2.0.9-GCC-8.3.0 | ||
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*[[Exonerate 2016 | Exonerate]]/2.4.0-GCC-8.3.0 | *[[Exonerate 2016 | Exonerate]]/2.4.0-GCC-8.3.0 | ||
*[[FastANI 2016 | FastANI]]/1.33-GCC-8.3.0 | *[[FastANI 2016 | FastANI]]/1.33-GCC-8.3.0 | ||
*[[FastANI 2016 | FastANI]]/1.33-iccifort-2019b | |||
*[[FASTX-Toolkit]]/0.0.14 | *[[FASTX-Toolkit]]/0.0.14 | ||
*[[FastQC]]/0.11.5 | *[[FastQC]]/0.11.5 | ||
*FASTA/36.3.8h-GCCcore-6.4.0 | *FASTA/36.3.8h-GCCcore-6.4.0 | ||
*FASTA/36.3.5e-GCCcore-6.4.0 | *FASTA/36.3.5e-GCCcore-6.4.0 | ||
*FastTree/2.1.11-GCCcore-8.3.0 | |||
*[[FreeSurfer 2016 | FreeSurfer]]/6.0.1 | |||
*[[FreeSurfer 2016 | FreeSurfer]]/7.1.0 | *[[FreeSurfer 2016 | FreeSurfer]]/7.1.0 | ||
*[[FreeSurfer 2016 | FreeSurfer]]/ | *[[FreeSurfer 2016 | FreeSurfer]]/7.3.0 | ||
*[[FreeSurfer 2016 | FreeSurfer]]/7.3.2 | |||
*[[FSL 2016 | FSL]]/6.0.0-foss-2017b | *[[FSL 2016 | FSL]]/6.0.0-foss-2017b | ||
*[[FSL 2016 | FSL]]/6.0.3-foss-2019b-Python-3.7.4 | *[[FSL 2016 | FSL]]/6.0.3-foss-2019b-Python-3.7.4 | ||
*[[FSL 2016 | FSL]]/6.0.4-fosscuda-2019b-Python-3.7.4 | *[[FSL 2016 | FSL]]/6.0.4-fosscuda-2019b-Python-3.7.4 | ||
*[[FSL 2016 | FSL]]/6.0.4-fosscuda-2019-EDDY | *[[FSL 2016 | FSL]]/6.0.4-fosscuda-2019-EDDY | ||
*[[FSL 2016 | FSL]]/6.0.5.1-fosscuda-2019b | |||
*[[FSL 2016 | fsl_sub]]/6.0.3-foss-2019b-Python-3.7.4 | |||
*[[FSL 2016 | FSL]]/6.0.6.2 | |||
*[[GATK]]/3.7-Java-8.112 | *[[GATK]]/3.7-Java-8.112 | ||
*[[GATK]]/4.1.4.1-GCCcore-8.3.0-Java-8 | *[[GATK]]/4.1.4.1-GCCcore-8.3.0-Java-8 | ||
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*[[IGV and IGVTools|IGVTools]]/2.3.75 | *[[IGV and IGVTools|IGVTools]]/2.3.75 | ||
*[[IGV and IGVTools|IGVTools]]/2.4.19-Java-11 | *[[IGV and IGVTools|IGVTools]]/2.4.19-Java-11 | ||
*Infernal/1.1.4-GCCcore-8.3.0 | |||
*[[illumina-utils 2016 | illumina-utils]]/2.12-foss-2019b-Python-3.7.4 | |||
*[[illumina-utils 2016 | illumina-utils]]/2.12-intel-2019b-Python-3.7.4 | |||
*[[ipyrad]]/0.9.62-foss-2019b-Python-3.7.4 | *[[ipyrad]]/0.9.62-foss-2019b-Python-3.7.4 | ||
*[[IsoSeq3 2016 | IsoSeq3]]/3.4.0 | *[[IsoSeq3 2016 | IsoSeq3]]/3.4.0 | ||
*[[IsoSeq3 2016 | IsoSeq3]]/3.3.0 | *[[IsoSeq3 2016 | IsoSeq3]]/3.3.0 | ||
*[[IQ-TREE 2016 | IQ-TREE]]/1.6.12-foss-2019b | *[[IQ-TREE 2016 | IQ-TREE]]/1.6.12-foss-2019b | ||
*[[IQ-TREE 2016 | IQ-TREE]]/2.1.3-foss-2019b | *[[IQ-TREE 2016 | IQ-TREE]]/2.1.3-foss-2019b | ||
*[[IQ-TREE 2016 | IQ-TREE]]/2.1.3-intel-2019b | |||
*Jellyfish/1.1.12-intel-2019b | |||
*Jellyfish/2.3.0-GCC-8.3.0 | *Jellyfish/2.3.0-GCC-8.3.0 | ||
*Kent_tools/401-gompi-2019b | *Kent_tools/401-gompi-2019b | ||
*[[KNIME 2016 | KNIME]] | *[[KNIME 2016 | KNIME]] | ||
*[[Kaldi 2016 | Kaldi]]/5.5-fosscuda-2019b_2021.07 | *[[Kaldi 2016 | Kaldi]]/5.5-fosscuda-2019b_2021.07 | ||
*[[Kaiju 2016 | Kaiju]]/1.9.2-GCCcore-8.3.0 | |||
*kallisto/0.46.1-foss-2019b | *kallisto/0.46.1-foss-2019b | ||
*[[KrakenUniq 2016 | KrakenUniq]]/1.0.3-GCCcore-8.3.0 | |||
*[[KrakenUniq 2016 | KrakenUniq]]/1.0.3-gompi-2019b | |||
*[[KrakenUniq 2016 | KrakenUniq]]/1.0.3-intel-2019b | |||
*LACHESIS/2017.12-foss-2019b | *LACHESIS/2017.12-foss-2019b | ||
*[[Lighter]]/1.0 | *[[Lighter]]/1.0 | ||
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*[[medaka 2016 | medaka]]/0.9.2-foss-2017b-Python-3.6.3 | *[[medaka 2016 | medaka]]/0.9.2-foss-2017b-Python-3.6.3 | ||
*[[medaka 2016 | medaka]]/0.10.1-foss-2017b-Python-3.6.3 | *[[medaka 2016 | medaka]]/0.10.1-foss-2017b-Python-3.6.3 | ||
*MEGAHIT/1.2.9-GCCcore-8.3.0 | |||
*MetaBAT/2.15-gompi-2019b | |||
*[[Mindboggle 2016 | Mindboggle]]/1.2.4-foss-2017b-Python-3.6.3 | *[[Mindboggle 2016 | Mindboggle]]/1.2.4-foss-2017b-Python-3.6.3 | ||
*[[minimap2 2016 | minimap2]]/2.13-foss-2017b | *[[minimap2 2016 | minimap2]]/2.13-foss-2017b | ||
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*[[MRtrix 2016 | MRtrix]]/3.0.2-intel-2019b-Python-3.7.4 | *[[MRtrix 2016 | MRtrix]]/3.0.2-intel-2019b-Python-3.7.4 | ||
*[[MultiQC 2016 | MultiQC]]/1.7-intel-2018a-Python-3.6.3 | *[[MultiQC 2016 | MultiQC]]/1.7-intel-2018a-Python-3.6.3 | ||
*[[MUSCLE 2016 | MUSCLE]]/MUSCLE | *[[MUSCLE 2016 | MUSCLE]]/3.8.31-GCC-8.3.0 | ||
*[[MUSCLE 2016 | MUSCLE]]/3.8.1551-GCC-8.3.0 | |||
*ncbi-vdb/2.11.2-iimpi-2019b | |||
*ncbi-genome-download/0.3.1-GCCcore-8.3.0 | |||
*[[NextGenMap]]/0.5.2 | *[[NextGenMap]]/0.5.2 | ||
*[[NextGenMap]]/0.5.5-intel-2016b | *[[NextGenMap]]/0.5.5-intel-2016b | ||
*[[nQuire 2016 | nQuire]]/2018.04-GCCcore-8.3.0 | |||
*NSEG/1.0-GCCcore-6.4.0 | *NSEG/1.0-GCCcore-6.4.0 | ||
*NSEG/1.0-GCCcore-8.3.0 | *NSEG/1.0-GCCcore-8.3.0 | ||
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*[[Picard 2016 | picard]]/2.22.3-Java-11 | *[[Picard 2016 | picard]]/2.22.3-Java-11 | ||
*[[Pilon 2016 | Pilon]]/1.23-Java-11 | *[[Pilon 2016 | Pilon]]/1.23-Java-11 | ||
*pplacer/1.1.alpha19 | |||
*[[Pychopper 2016 | Pychopper]]/0.4.0-intel-2018a-Python-3.7.0 | *[[Pychopper 2016 | Pychopper]]/0.4.0-intel-2018a-Python-3.7.0 | ||
*Pysam/0.15.2-GCC-6.4.0-2.28 | *Pysam/0.15.2-GCC-6.4.0-2.28 | ||
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*[[SAMtools]]/1.9-foss-2017b | *[[SAMtools]]/1.9-foss-2017b | ||
*[[SAMtools]]/1.9-GCC-8.3.0 | *[[SAMtools]]/1.9-GCC-8.3.0 | ||
*[[SAMtools]]/1.10-iccifort-2019b | |||
*seqtk/1.3-r117-dirty-GCC-8.3.0 | |||
*SeqKit/2.3.1 | |||
*[[SHAPEIT4 2016 | SHAPEIT4]]/4.2.2-foss-2019b | *[[SHAPEIT4 2016 | SHAPEIT4]]/4.2.2-foss-2019b | ||
*[[SNAP 2016 | SNAP]]/1.0beta.23-foss-2017b | *[[SNAP 2016 | SNAP]]/1.0beta.23-foss-2017b | ||
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*[[Stacks]]/2.1-intel-2018a | *[[Stacks]]/2.1-intel-2018a | ||
*[[Stacks]]/2.4-intel-2018a | *[[Stacks]]/2.4-intel-2018a | ||
*[[Stacks]]/2.4.1-foss/ | *[[Stacks]]/2.4.1-foss-2017b | ||
*[[Stacks]]/2.57-iccifort-2019b | |||
*[[Stacks]]/2.62-foss-2019b | |||
*[[STAR 2016 | STAR]]/2.5.4b-intel-2016b | *[[STAR 2016 | STAR]]/2.5.4b-intel-2016b | ||
*[[STAR 2016 | STAR]]/2.6.1 d-foss-2017b | *[[STAR 2016 | STAR]]/2.6.1 d-foss-2017b | ||
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*survival/3.2-7-foss-2019b-R-4.0.2 | *survival/3.2-7-foss-2019b-R-4.0.2 | ||
*tabix/0.2.6 | *tabix/0.2.6 | ||
*TRUFFLE/1.38 | |||
*[[TopHat]]/2.1.1 | *[[TopHat]]/2.1.1 | ||
*[[TransDecoder 2016 | TransDecoder]]/5.5.0-intel-2019b-Perl-5.30.0 | *[[TransDecoder 2016 | TransDecoder]]/5.5.0-intel-2019b-Perl-5.30.0 | ||
Line 322: | Line 343: | ||
*[[Trinity]]/2.8.4 | *[[Trinity]]/2.8.4 | ||
*[[Trinity]]/2.14.0-foss-2019b-Python-3.7.4 | *[[Trinity]]/2.14.0-foss-2019b-Python-3.7.4 | ||
*tRNAscan-SE/2.0.11-GCCcore-8.3.0 | |||
*trimAl/1.4.1-GCCcore-8.3.0 | |||
*[[TOGA 2016 | TOGA]]/1.0-intel-2019b-Python-3.7.4 | *[[TOGA 2016 | TOGA]]/1.0-intel-2019b-Python-3.7.4 | ||
*[[Fiji/Unet 2016 | Unet]]/2019.02-intel-2018a-Python-3.6.3 | *[[Fiji/Unet 2016 | Unet]]/2019.02-intel-2018a-Python-3.6.3 | ||
*[[VCFTools]]/0.1.14 | *[[VCFTools]]/0.1.14 | ||
*[[VCFTools]]/0.1.16 | *[[VCFTools]]/0.1.16 | ||
*vmatch/2.3.1 | |||
*VSEARCH/2.14.2-foss-2019b | *VSEARCH/2.14.2-foss-2019b | ||
*[[ViennaRNA]]/2.3.1 | *[[ViennaRNA]]/2.3.1 | ||
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*[[OpenFOAM_2016 | OpenFOAM-Plus]]/2006-gimkl-2019b | *[[OpenFOAM_2016 | OpenFOAM-Plus]]/2006-gimkl-2019b | ||
*[[OpenFOAM_2016 | OpenFOAM-Plus]]/2012-gimkl-2019b | *[[OpenFOAM_2016 | OpenFOAM-Plus]]/2012-gimkl-2019b | ||
*[[OpenFOAM_2016 | OpenFOAM-Plus]]/2106-gimkl-2019b | *[[OpenFOAM_2016 | OpenFOAM-Plus]]/2106-gimkl-2019b | ||
*[[OpenFOAM_2016 | OpenFOAM]]/v1912-foss-2019b | |||
*[[OpenFOAM_2016 | OpenFOAM]]/v1912-intel-2019b | |||
*[[OpenFOAM_2016 | OpenFOAM]]/v2112-foss-2019b | |||
*[[OpenFOAM_2016 | OpenFOAM]]/v2112-gomkl-2019b | |||
*[[OpenFOAM_2016 | OpenFOAM]]/v2206-gimkl-2019b | |||
*[[Install PALM on Eddy| PALMDependencies]]/all | *[[Install PALM on Eddy| PALMDependencies]]/all | ||
*[[THETA 2016 | ThetaDependencies]]/all | *[[THETA 2016 | ThetaDependencies]]/all | ||
*UPP/11.0.0-intel-2019b | |||
*[[WRF/WPS 2016 | WPS]]/3.6.1 | *[[WRF/WPS 2016 | WPS]]/3.6.1 | ||
*[[WRF/WPS 2016 | WPS]]/3.7.1 | *[[WRF/WPS 2016 | WPS]]/3.7.1 | ||
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*[[CP2K 2016 | CP2K]]/2022.1-intel-2019b-FFTW-MKL-usempi | *[[CP2K 2016 | CP2K]]/2022.1-intel-2019b-FFTW-MKL-usempi | ||
*[[CP2K 2016 | CP2K]]/2022.1-intel-2019b-FFTW-MKL | *[[CP2K 2016 | CP2K]]/2022.1-intel-2019b-FFTW-MKL | ||
*dftd3-lib/0.9-iccifort-2019b | |||
*[[Gaussian 2016|gaussian]]/g09.b01 | *[[Gaussian 2016|gaussian]]/g09.b01 | ||
*[[Gaussian 2016|gaussian]]/g09.d01 | *[[Gaussian 2016|gaussian]]/g09.d01 | ||
Line 470: | Line 501: | ||
*[[ANTs 2016 | ANTs]]/2.2.0-foss-2017b-Python-3.6.3 | *[[ANTs 2016 | ANTs]]/2.2.0-foss-2017b-Python-3.6.3 | ||
*[[ANTs 2016 | ANTs]]/2.2.0-foss-2017b-Python-3.7.0 | *[[ANTs 2016 | ANTs]]/2.2.0-foss-2017b-Python-3.7.0 | ||
*[[ANTs 2016 | ANTs]]/2.3.2-foss-2019b-Python-3.7.4 | |||
*[[ANTs 2016 | ANTs]]/2.3.2-intel-2019b-Python-3.7.4 | |||
*Arrow/0.16.0-foss-2019b-Python-3.7.4 | *Arrow/0.16.0-foss-2019b-Python-3.7.4 | ||
*Arrow/6.0.0-foss-2019b | *Arrow/6.0.0-foss-2019b | ||
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*[[HDF5 2016|HDF5]]HDF5/1.12.1-gompic-2022.07 | *[[HDF5 2016|HDF5]]HDF5/1.12.1-gompic-2022.07 | ||
*[[HDF5 2016|HDF5]]HDF5/1.12.1-gcccuda-2022.07 | *[[HDF5 2016|HDF5]]HDF5/1.12.1-gcccuda-2022.07 | ||
*hzar/0.2-5-foss-2019b-R-4.1.0 | |||
*MariaDB/10.3.10-foss-2017b | *MariaDB/10.3.10-foss-2017b | ||
*MariaDB/10.4.13-gompi-2019b | *MariaDB/10.4.13-gompi-2019b | ||
Line 547: | Line 581: | ||
*[[PyTables 2016 | PyTables]]/3.5.1-foss-2017b-Python-3.6.3 | *[[PyTables 2016 | PyTables]]/3.5.1-foss-2017b-Python-3.6.3 | ||
*pyproj/2.4.2-GCCcore-8.3.0-Python-3.7.4 | *pyproj/2.4.2-GCCcore-8.3.0-Python-3.7.4 | ||
*python-Levenshtein/0.12.0-foss-2019b-Python-3.7.4 | |||
*python-Levenshtein/0.12.2-foss-2019b-Python-3.7.4 | |||
*python-Levenshtein/0.12.2-GCCcore-8.3.0-Python-3.7.4 | |||
*rgdal/1.5-23-foss-2019b-R-4.1.0 | *rgdal/1.5-23-foss-2019b-R-4.1.0 | ||
*ROOT/v5.34.36 | *ROOT/v5.34.36 | ||
Line 554: | Line 591: | ||
*ROOT/6.22.06-fosscuda-2019b-Python-3.7.4 | *ROOT/6.22.06-fosscuda-2019b-Python-3.7.4 | ||
*ROOT/6.24.06-foss-2019b | *ROOT/6.24.06-foss-2019b | ||
*RRBoost/0.1-foss-2019b-R-4.1.0 | |||
*[[RStan 2016 | RStan]]/2.19.2-intel-2018a-R-3.6.1 | *[[RStan 2016 | RStan]]/2.19.2-intel-2018a-R-3.6.1 | ||
*[[SALOME 2016 | SALOME]]/9.7.0-GCCcore-8.3.0-Python-3.7.4 | *[[SALOME 2016 | SALOME]]/9.7.0-GCCcore-8.3.0-Python-3.7.4 | ||
*scikit-learn/0.23.2-foss-2019b-Python-3.7.4 | |||
*scikit-learn/0.23.2-intel-2019b-Python-3.7.4 | *scikit-learn/0.23.2-intel-2019b-Python-3.7.4 | ||
*scikit-learn/0.23.2-fosscuda-2019b-Python-3.7.4 | *scikit-learn/0.23.2-fosscuda-2019b-Python-3.7.4 | ||
Line 674: | Line 713: | ||
*protobuf/3.17.3-GCCcore-8.3.0.eb | *protobuf/3.17.3-GCCcore-8.3.0.eb | ||
*pkg-config/0.29.1-gimpi-6.2016 | *pkg-config/0.29.1-gimpi-6.2016 | ||
*pkgconf/1.8.0-GCCcore-8.3.0 | |||
*pkgconfig/1.2.2-intel-2018a-Python-3.6.3 | *pkgconfig/1.2.2-intel-2018a-Python-3.6.3 | ||
*pkgconfig/1.5.1-foss-2017b-Python-3.6.3 | *pkgconfig/1.5.1-foss-2017b-Python-3.6.3 | ||
Line 689: | Line 729: | ||
*[[ PyTorch 2016 | PyTorch ]]/1.9.0-fosscuda-2019b-Python-3.7.4 | *[[ PyTorch 2016 | PyTorch ]]/1.9.0-fosscuda-2019b-Python-3.7.4 | ||
*[[ PyTorch 2016 | PyTorch ]]/1.11.0-gcccuda-2021.06-conda | *[[ PyTorch 2016 | PyTorch ]]/1.11.0-gcccuda-2021.06-conda | ||
*[[ PyTorch 2016 | PyTorch ]]/1.13.1-conda | |||
*SCons/3.0.5-intel-2018a-Python-3.6.3 | *SCons/3.0.5-intel-2018a-Python-3.6.3 | ||
*sparsehash/2.0.3-GCCcore-6.4.0 | *sparsehash/2.0.3-GCCcore-6.4.0 | ||
Line 746: | Line 787: | ||
*[[Julia 2016 | Julia]]/1.0.5-LTS-linux-x86_64 | *[[Julia 2016 | Julia]]/1.0.5-LTS-linux-x86_64 | ||
*[[Julia 2016 | Julia]]/1.6.1-linux-x86_64 | *[[Julia 2016 | Julia]]/1.6.1-linux-x86_64 | ||
*[[Julia 2016 | Julia]]/1.6.7-LTS-linux-x86_64 | |||
*[[Julia 2016 | Julia]]/1.8.5-linux-x86_64 | |||
*[[Lua 2016 | Lua]]/5.1.5-GCCcore-8.3.0 | *[[Lua 2016 | Lua]]/5.1.5-GCCcore-8.3.0 | ||
*[[Lua 2016 | Lua]]/5.3.5-GCCcore-8.3.0 | *[[Lua 2016 | Lua]]/5.3.5-GCCcore-8.3.0 | ||
Line 775: | Line 818: | ||
*[[R 2016| R]]/4.0.2-foss-2019b | *[[R 2016| R]]/4.0.2-foss-2019b | ||
*[[R 2016| R]]/4.0.2-foss-2019b-2021.06 | *[[R 2016| R]]/4.0.2-foss-2019b-2021.06 | ||
*[[R 2016| R-core]]4.1.0-foss-2019b | |||
*[[R 2016| R-core]]4.2.2-intel-2019b | |||
*Rbundle4anvio/2022.11-intel-2019b-R-4.2.2 | |||
*[[RStudio 2016 | RStudio]]/1.2.5019-intel-2018a | *[[RStudio 2016 | RStudio]]/1.2.5019-intel-2018a | ||
*[[RStudio 2016 | RStudio]]/1.4.1106-foss-2019b-Java-11-R-4.0.2 | *[[RStudio 2016 | RStudio]]/1.4.1106-foss-2019b-Java-11-R-4.0.2 | ||
Line 833: | Line 879: | ||
*libffi/3.2.1-gimpi-6.2016 | *libffi/3.2.1-gimpi-6.2016 | ||
*libfabric/1.11.0-GCCcore-8.3.0 | *libfabric/1.11.0-GCCcore-8.3.0 | ||
*libgd/2.2.5-GCCcore-8.3.0 | |||
*libglade/2.6.4-intel-2016b | *libglade/2.6.4-intel-2016b | ||
*libglade/2.6.4-intel-2019b | *libglade/2.6.4-intel-2019b | ||
Line 878: | Line 925: | ||
mpi4py/3.0.3-iimpi-2019b | mpi4py/3.0.3-iimpi-2019b | ||
*mysqlclient/1.4.2-foss-2017b-Python-2.7.14 | *mysqlclient/1.4.2-foss-2017b-Python-2.7.14 | ||
*NCEPLIBS-bacio/2.5.0-intel-2019b | |||
*NCEPLIBS-g2/3.4.5-intel-2019b | |||
*NCEPLIBS-g2c/1.7.0-intel-2019b | |||
*NCEPLIBS-g2tmpl/1.10.2-intel-2019b | |||
*NCEPLIBS-sp/2.3.3-intel-2019b | |||
*NCCL/2.4.8-gcccuda-2019b | *NCCL/2.4.8-gcccuda-2019b | ||
*NCCL/2.11.4-gcccuda-2022.07 | *NCCL/2.11.4-gcccuda-2022.07 | ||
Line 899: | Line 951: | ||
*PyYAML/3.13-foss-2017b-Python-3.6.3 | *PyYAML/3.13-foss-2017b-Python-3.6.3 | ||
*PyYAML/5.1-foss-2017b-Python-2.7.14 | *PyYAML/5.1-foss-2017b-Python-2.7.14 | ||
*PyYAML/5.4.1-GCCcore-8.3.0 | |||
*PyYAML/6.0-GCCcore-8.3.0 | |||
*RapidJSON/1.1.0-GCCcore-8.3.0 | *RapidJSON/1.1.0-GCCcore-8.3.0 | ||
*RE2/2020-07-01-GCCcore-8.3.0 | *RE2/2020-07-01-GCCcore-8.3.0 | ||
Line 936: | Line 990: | ||
*zstd/1.5.0-GCCcore-8.3.0 | *zstd/1.5.0-GCCcore-8.3.0 | ||
*zstd/1.5.2-GCCcore-8.3.0 | *zstd/1.5.2-GCCcore-8.3.0 | ||
*zstd/1.5.4-GCCcore-8.3.0 | |||
===/cm/shared/uniol/modules/math=== | ===/cm/shared/uniol/modules/math=== | ||
*biomod2/3.4.6-foss-2019b-R-4.0.2 | *biomod2/3.4.6-foss-2019b-R-4.0.2 | ||
*dReal/4.21.06.1-Singularity | |||
*Eigen/3.2.9-gimpi-6.2016 | *Eigen/3.2.9-gimpi-6.2016 | ||
*Eigen/3.3.7 | *Eigen/3.3.7 | ||
Line 944: | Line 1,000: | ||
*ELPA/2019.11.001-intel-2019b | *ELPA/2019.11.001-intel-2019b | ||
*ELPA/2020.11.001-foss-2019b | *ELPA/2020.11.001-foss-2019b | ||
*ELSI/2.7.1-intel-2019b-PEXSI | |||
*[[bgc 2016 | bgc]]/1.03-intel-2018a | *[[bgc 2016 | bgc]]/1.03-intel-2018a | ||
*GEOS/3.8.0-GCC-8.3.0-Python-3.7.4 | *GEOS/3.8.0-GCC-8.3.0-Python-3.7.4 | ||
Line 949: | Line 1,006: | ||
*GMP/6.1.0-intel-2016b | *GMP/6.1.0-intel-2016b | ||
*GMP/6.1.1 | *GMP/6.1.1 | ||
*[[KaHIP 2016 | KaHIP]]/3.14-gimkl-2019b | |||
*[[KaHIP 2016 | KaHIP]]/3.14-gompi-2019b | |||
*[[Keras 2016 | Keras ]]/2.1.5-intel-2018a-Python-3.6.3 | *[[Keras 2016 | Keras ]]/2.1.5-intel-2018a-Python-3.6.3 | ||
*[[Keras 2016 | Keras ]]/2.2.4-foss-2017b-Python-3.6.3 | *[[Keras 2016 | Keras ]]/2.2.4-foss-2017b-Python-3.6.3 | ||
Line 963: | Line 1,022: | ||
*[[NEURON 2016 | NEURON]]/7.5-intel-2016b | *[[NEURON 2016 | NEURON]]/7.5-intel-2016b | ||
*[[NEURON 2016 | NEURON]]/7.6.2-intel-2018a | *[[NEURON 2016 | NEURON]]/7.6.2-intel-2018a | ||
*NTPoly/2.7.0-intel-2019b | |||
*numexpr/2.6.5-foss-2017b-Python-3.6.3 | *numexpr/2.6.5-foss-2017b-Python-3.6.3 | ||
*ParMETIS/4.0.3-foss-2019b | *ParMETIS/4.0.3-foss-2019b | ||
Line 973: | Line 1,033: | ||
*SCOTCH/6.0.9-gompi-2019b | *SCOTCH/6.0.9-gompi-2019b | ||
*SCOTCH/6.0.9-iimpi-2019b | *SCOTCH/6.0.9-iimpi-2019b | ||
*SCOTCH/7.0.1-gimkl-2019b | |||
*SCOTCH/7.0.1-gompi-2019b | |||
*Shapely/1.7.0-GCC-8.3.0-Python-3.7.4 | *Shapely/1.7.0-GCC-8.3.0-Python-3.7.4 | ||
*statsmodels/0.13.2-foss-2019b | *statsmodels/0.13.2-foss-2019b | ||
Line 1,104: | Line 1,166: | ||
*[[Octopus 2016 | Octopus]]/10.3-foss-2019b | *[[Octopus 2016 | Octopus]]/10.3-foss-2019b | ||
*[[OpenFAST 2016 | OpenFAST]]/3.1.0-intel-2019b | *[[OpenFAST 2016 | OpenFAST]]/3.1.0-intel-2019b | ||
*[[OpenFAST 2016 | OpenFAST]]/3.3.0-intel-2019b | |||
*[[PVMOS 2016 | PVMOS]]/0.48 | *[[PVMOS 2016 | PVMOS]]/0.48 | ||
*[[SCUFF-EM 2016 | SCUFF-EM]]/0.96-intel-2018a | *[[SCUFF-EM 2016 | SCUFF-EM]]/0.96-intel-2018a | ||
Line 1,154: | Line 1,217: | ||
===/cm/shared/uniol/modules/tools=== | ===/cm/shared/uniol/modules/tools=== | ||
*ansys/18.0 | *ansys/18.0 | ||
*awscli/1.27.64-GCCcore-8.3.0-Python-3.7.4 | |||
*bzip2/1.0.6-gimpi-6.2016 | *bzip2/1.0.6-gimpi-6.2016 | ||
*bokeh/1.4.0-fosscuda-2019b-Python-3.7.4 | *bokeh/1.4.0-fosscuda-2019b-Python-3.7.4 | ||
Line 1,159: | Line 1,223: | ||
*behave/1.2.7.dev2-intel-2019b-Python-3.7.4 | *behave/1.2.7.dev2-intel-2019b-Python-3.7.4 | ||
*configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7 | *configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7 | ||
*CONN/20a-MATLAB-2020a | |||
*DB/18.1.32-GCCcore-8.3.0 | *DB/18.1.32-GCCcore-8.3.0 | ||
*EasyBuild/3.0.0 | *EasyBuild/3.0.0 | ||
Line 1,212: | Line 1,277: | ||
*[[Singularity 2016 | Singularity]]/2.6.1-GCCcore-6.4.0 | *[[Singularity 2016 | Singularity]]/2.6.1-GCCcore-6.4.0 | ||
*[[ Spyder 2016 | Spyder]]/5.0.0a2-foss-2019b-Python-3.7.4 | *[[ Spyder 2016 | Spyder]]/5.0.0a2-foss-2019b-Python-3.7.4 | ||
*SPM/12.5_r7771-MATLAB-2020a | |||
*UnZip/6.0-GCCcore-8.3.0 | *UnZip/6.0-GCCcore-8.3.0 | ||
*util-linux/2.29-intel-2016b | *util-linux/2.29-intel-2016b | ||
Line 1,219: | Line 1,285: | ||
*XZ/5.2.2-gimpi-6.2016 | *XZ/5.2.2-gimpi-6.2016 | ||
*XZ/5.2.2-intel-2016b | *XZ/5.2.2-intel-2016b | ||
*yaml-cpp/0.6.3-GCCcore-8.3.0 | |||
===/cm/shared/uniol/modules/vis=== | ===/cm/shared/uniol/modules/vis=== | ||
Line 1,260: | Line 1,327: | ||
*GLib/2.62.0-GCCcore-8.3.0 | *GLib/2.62.0-GCCcore-8.3.0 | ||
*Graphviz/2.49.0-GCCcore-8.3.0-Java-11 | *Graphviz/2.49.0-GCCcore-8.3.0-Java-11 | ||
*Graphviz/5.0.0-GCCcore-8.3.0-Python-3.7.4 | |||
*GraphicsMagick/1.3.25-intel-2016b | *GraphicsMagick/1.3.25-intel-2016b | ||
*GTK+/2.24.3-intel-2016b | *GTK+/2.24.3-intel-2016b | ||
Line 1,269: | Line 1,337: | ||
*[[ImageMagic 2016 | ImageMagic]]/7.0.8-46-GCCcore-6.4.0 | *[[ImageMagic 2016 | ImageMagic]]/7.0.8-46-GCCcore-6.4.0 | ||
*[[ImageMagic 2016 | ImageMagic]]/7.0.9-5-GCCcore-8.3.0 | *[[ImageMagic 2016 | ImageMagic]]/7.0.9-5-GCCcore-8.3.0 | ||
*inputproto/2.3-goolf-5.2.01 | *inputproto/2.3-goolf-5.2.01 | ||
*JasPer/2.0.14-GCCcore-8.3.0 | |||
*JasPer/2.0.33-GCCcore-8.3.0 | |||
*kbproto/1.0.6-goolf-5.2.01 | *kbproto/1.0.6-goolf-5.2.01 | ||
*libGLU/9.0.1-GCCcore-8.3.0 | *libGLU/9.0.1-GCCcore-8.3.0 | ||
Line 1,342: | Line 1,412: | ||
*VTK/8.1.1-foss-2017b-Python-2.7.14 | *VTK/8.1.1-foss-2017b-Python-2.7.14 | ||
*VTK/8.2.0-foss-2019b-Python-3.7.4 | *VTK/8.2.0-foss-2019b-Python-3.7.4 | ||
*VTK/8.2.0-intel-2019b-Python-3.7.4 | |||
*VTK/9.0.1-fosscuda-2019b-Python-3.7.4 | *VTK/9.0.1-fosscuda-2019b-Python-3.7.4 | ||
*VTK/9.0.1-fosscuda-2019b_master (more recent than 9.0.1 & bug-fixed) | *VTK/9.0.1-fosscuda-2019b_master (more recent than 9.0.1 & bug-fixed) | ||
*VTK/9.0.1-fosscuda-2019b-Qt5 | |||
*VTK/9.0.3-fosscuda-2019b-Qt5 | *VTK/9.0.3-fosscuda-2019b-Qt5 | ||
*X11/20160819-goolf-5.2.01 | *X11/20160819-goolf-5.2.01 |
Latest revision as of 10:10, 27 April 2023
Introduction
This page was created to give you an overview of the installed software on the cluster (name/version). The list will be updated at least once per week.
If you find a program in this list, but can't find it on the cluster (for example when looking at the output of the command module avail) it has most likely been hidden. Its also possible that a module isn't listed here for the same reason. You can find every hidden module here: /cm/shared/uniol/modules/.hidden. If you want to access a hidden module, you have to add a "." in front of the version number, e.g.:
[abcd1234@hpcl001 ~]$ module load PCRE/8.39-intel-2016b Lmod has detected the following error: The following module(s) are unknown: "PCRE/8.39-intel-2016b" Please also double check spelling and the version number you typed in. Also try "module spider <name>" to include every software package on all environents.
After loading the desired software module you can check all currently loaded modules with "ml": [abcd1234@hpcl001 ~]$ module load PCRE/.8.39-intel-2016b [abcd1234@hpcl001 ~]$ ml Currently Loaded Modules: 1) hpc-uniol-env 3) icc/2016.3.210 5) binutils/.2.26-GCCcore-5.4.0 7) impi/5.1.3.210 9) imkl/11.3.3.210 11) PCRE/.8.39-intel-2016b 2) slurm/current 4) GCCcore/.5.4.0 6) ifort/2016.3.210 8) iimpi/2016b 10) intel/2016b
Latest installed programs and version updates
To keep you up to date, all newly installed programs and version updates of the last two to three months (ca.) are listed in this section. Since early 2020, every new program is installed in the new environment hpc-env/8.3.
Software | Version | Toolchain | Install Date (D/M/Y) |
---|---|---|---|
ncbi-genome-download | 0.3.1 | GCCcore/8.3.0 | 27/04/2023 |
illumina-utils | 2.12 | intel/2019b | 15/03/2023 |
KrakenUniq | 1.0.3 | GCCcore, intel & gompi | 14/03/2023 |
KaHIP | 3.14 | gimkl & gompi | 06/03/2023 |
Kaiju | 1.9.2 | GCCcore/8.3.0 | 28/02/2023 |
FSL | 6.0.6.2 | SYSTEM | 21/02/2023 |
PyTorch | 1.13.1 | conda | 17/02/2023 |
OpenFOAM | v2112 | gimkl/2019b & foss/2019b | 14/02/2023 |
CONCOCT | 1.1.0 | foss/2019b | 07/2023 |
Julia | 1.8.5 & 1.6.7-LTS | SYSTEM | 03/02/2023 |
CheckM | 1.1.10 | foss/2019b | 03/02/2023 |
MetaBAT | 2.15 | gompi/2019b | 03/02/2023 |
Installed Software
/cm/local/modulefiles
- cluster-tools/7.3
- cmd
- dot
- freeipmi/1.5.2
- gcc/6.1.0
- ipmitool/1.8.17
- module-git
- module-info
- openldap
- shared
- hpc-uniol-env (L)
- slurm/current (L)
- ABySS/2.3.5-foss-2019b
- anvio/7.1-intel-2019b-Python-3.7.4
- AUGUSTUS/3.2.3-intel-2016b-Python-2.7.12
- AUGUSTUS/3.2.3-intel-2018a-Python-2.7.14
- AUGUSTUS/3.3-intel-2018a
- AUGUSTUS/3.3.2-intel-2018a
- AUGUSTUS/3.3.3-foss-2019b
- AUGUSTUS/3.4.0-foss-2019b
- bam_to_mate_hist/2018.09-intel-2018a-Python-2.7.14
- bam_to_mate_hist/2018.11-intel-2018a-Python-2.7.14
- BayeScan/2.1-intel-2018a
- bcl2fastq2/2.18.0.12
- bcl2fastq2/2.19.0
- BEDTools/2.26.0
- BEDTools/2.29.2-GCC-8.3.0
- BEDTools/2.30.0-iccifort-2019b
- BLAST/2.11.0-Linux_x86_64
- BLAST/2.2.26
- BLAST/2.6.0
- BLAST/2.11.0-Linux_x86_64
- BLAST+/2.7.1-foss-2017b-Python-2.7.14
- BLAST+/2.7.1-intel-2018a
- BLAST+/2.11.0-gompi-2019b
- BLAST+/2.13.0-gompi-2019b
- BLAT/3.5
- BamTools/2.4.0
- BamTools/2.4.1-intel-2018a
- BamTools/2.5.1-intel-2018a
- BamTools/2.5.1-foss-2019b
- BamTools/2.5.1-GCC-8.3.0
- BamTools/2.5.1-iccifort-2019b
- BBMap/38.61b-foss-2017b
- BCFtools/1.3.1
- BCFtools/1.9-foss-2019b
- BCFtools/1.6
- BCFtools/1.15.1-GCC-8.3.0
- Beast/2.4.5
- Beast/2.6.3-GCC-8.3.0
- BioPerl/1.7.0
- BioPerl/1.7.2-foss-2017b-Perl-5.26.0
- BioPerl/1.7.8-GCCcore-8.3.0
- Biopython/1.68
- Biopython/1.71-intel-2018a-Python-3.7.0
- Biopython/1.71-intel-2018a-Python-2.7.14
- Biopython/1.73-foss-2017b-Python-3.6.3
- Biopython/1.78-foss-2019b-Python-3.7.4
- Bowtie/1.1.2
- Bowtie/1.2.2-intel-2018a
- Bowtie2/2.2.9
- Bowtie2/2.3.2-intel-2017a
- Bowtie2/2.3.4.1-intel-2018a
- Bowtie2/2.3.4.3-foss-2017b
- Bowtie2/2.3.5.1-GCC-6.4.0-2.28
- Bowtie2/2.3.5.1-iccifort-2019b
- Bowtie2/2.4.1-GCC-8.3.0
- BRAKER2/2.1.2
- BRAKER2/2.1.4
- BRAKER2/2.1.6-foss-2019b-Python-3.7.4-GeneMark-EX-4.69
- bwa.kit/0.7.12
- bwa.kit/0.7.17
- BWA/0.7.17-GCC-8.3.0
- BWA/0.7.17-GCC-8.3.0
- BWA/0.7.17-GCCcore-8.3.0
- bwa-mem2/2.0pre1-GCCcore-6.4.0
- CESAR/2.0-intel-2019b_25-08-2020
- CONCOCT/1.1.0-foss-2019b-Python-3.7.4
- CONCOCT/1.1.0-intel-2019b-Python-3.7.4
- caffe_unet/99bd99795d-intel-2016b-Python-2.7.12
- canu/1.7-intel-2016b
- canu/1.8-foss-2017b-Perl-5.28.0
- canu/2.1.1-GCCcore-8.3.0
- cdbfasta/0.99-GCC-8.3.0
- CD-HIT/4.6.4
- CD-HIT/4.8.1-GCC-8.3.0
- CD-HIT/4.8.1-iccifort-2019b
- CellRanger/6.1.1
- CESAR/2.0-intel-2019b_25-08-2020
- Centrifuge/1.0.4-iimpi-2019b
- CheckM/1.1.2-foss-2019b-Python-3.7.4
- CheckM/1.1.2-intel-2019b-Python-3.7.4
- CheckM/1.1.10-foss-2019b-Python-3.7.4
- ConnectomeWorkbench /1.3.2-GCCcore-8.3.0
- ConnectomeWorkbench /1.5.0-GCCcore-8.3.0
- cutadapt/1.9.1
- DendroPy/4.5.2-GCCcore-8.3.0
- discovardenovo/52488
- DIAMOND/2.0.9-GCC-8.3.0
- DIAMOND/2.0.9-GCCcore-8.3.0
- Exonerate/2.4.0-foss-2017b
- Exonerate/2.4.0-intel-2018a
- Exonerate/2.4.0-GCC-8.3.0
- FastANI/1.33-GCC-8.3.0
- FastANI/1.33-iccifort-2019b
- FASTX-Toolkit/0.0.14
- FastQC/0.11.5
- FASTA/36.3.8h-GCCcore-6.4.0
- FASTA/36.3.5e-GCCcore-6.4.0
- FastTree/2.1.11-GCCcore-8.3.0
- FreeSurfer/6.0.1
- FreeSurfer/7.1.0
- FreeSurfer/7.3.0
- FreeSurfer/7.3.2
- FSL/6.0.0-foss-2017b
- FSL/6.0.3-foss-2019b-Python-3.7.4
- FSL/6.0.4-fosscuda-2019b-Python-3.7.4
- FSL/6.0.4-fosscuda-2019-EDDY
- FSL/6.0.5.1-fosscuda-2019b
- fsl_sub/6.0.3-foss-2019b-Python-3.7.4
- FSL/6.0.6.2
- GATK/3.7-Java-8.112
- GATK/4.1.4.1-GCCcore-8.3.0-Java-8
- GATK/4.1.8.1-GCCcore-8.3.0-Java-8
- GeneMark-EX/4.33
- GeneMark-EX/4.69-GCCcore-8.3.0
- genomescope/v2-2020.03-foss-2019b-R-4.0.2
- GenomeThreader/1.7.1-Linux_x86_64-64bit
- GenomeThreader/1.7.3-Linux_x86_64-64bit
- genometools/1.5.10-foss-2017b
- GenomeTools/1.6.1-GCC-8.3.0
- GffCompare/0.10.1-foss-2017b
- GffCompare/0.10.6-foss-2017b
- gffread/0.9.12-foss-2017b
- GROMACS/5.1.4-intel-2016b-mt
- GROMACS/2021.5-fosscuda-2022.07
- hapflk/1.4-intel-2019b-Python-2.7.16
- HTSlib/1.5-intel-2017a
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- FFTW/3.3.5-gompi-5.2.01
- FFTW-3.3.8-gompic-2019b
- FFTW/3.3.8-gompi-2019b
- FFTW/3.3.10-gompic-2022.07
- FIAT/1.6.0-intel-2016b-Python-2.7.12
- GMP/6.1.1 (D)
- GSL/2.1-intel-2016b
- GSL/2.3-goolf-6.2.01
- GSL/2.3-intel-2016b
- GSL/2.4-GCCcore-6.4.0
- GSL/2.4-goolf-7.2.11
- GSL/2.6-GCC-8.3.0
- GSL/2.6-GCCcore-8.3.0
- Hypre/2.11.1
- Hypre/2.18.2-intel-2019b
- imkl/11.3.3.210
- leda/6.3
- LinBox/1.4.0
- Maple/2022
- MATLAB/2016b
- MATLAB/2017b
- MATLAB/2018b
- MATLAB/2019b
- MATLAB/2019b
- MATLAB/2020a
- MPFR/3.1.4
- NLopt/2.4.2-foss-2017b
- NLopt/2.4.2-intel-2018a
- NLopt/2.6.1-GCCcore-6.4.0
- NTL/9.8.1
- Octave/4.0.3
- OpenBLAS/0.2.19
- OpenBLAS/0.2.20-GCC-6.4.0-2.28
- PETSc/3.14.4-intel-2019b
- PETSc/3.15.5-conda
- PETSc/3.15.5-intel-2019b-conda
- PETSc/3.17.4-intel-2019b-downloaded-deps
- PETSc/3.17.4-intel-2019b
- Qhull/2015.2
- Qhull/2020.2-GCCcore-8.3.0
- ScaLAPACK/2.0.2
- ScaLAPACK/2.0.2-gompi-2019b
- ScaLAPACK/2.0.2-gompic-2019b
- ScaLAPACK/2.1.0-gompic-2022.07
- SuiteSparse/4.5.3
- SuiteSparse/4.5.3-intel-2018a-METIS-5.1.0
- SuiteSparse/5.2.0-intel-2016b-METIS-5.1.0
- SuiteSparse/5.2.0-intel-2018a-METIS-5.1.0
- SuiteSparse/5.6.0-foss-2019b
- SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0
- stata/13
- EGSnrc/2017
- EGSnrc/2018
- EGSnrc/2019
- ElmerFEM/9.0-foss-2019b
- Lumerical/2021-R2.2-2806
- fluka/2011.2x-GCC-8.1.0-2.30
- fluka/2020.0beta-GCC-8.1.0-2.30
- fluka/2020.0beta-GCC-9.2.0
- fluka/2021.2-Singularity
- GATE/8.0-intel-2018a-Python-2.7.14
- GATE/9.0-foss-2019b-Python-3.7.4
- GATE/9.0-fosscuda-2019b-Python-3.7.4
- GATE/GATE/9.2-fosscuda-2022.07
- GATE/GATE/9.2-foss-2019b
- Geant4/9.6.p04
- Geant4/10.01.p01
- Geant4/10.01.p03
- Geant4/10.02.p01
- Geant4/10.03.p01
- Geant4/10.4.1-intel-2018a-noMT
- Geant4/10.4.1-intel-2018a
- Geant4/10.5.0-foss-2017b-noMT
- Geant4/0.6-foss-2019b-noMT
- Geant4/10.6-foss-2019b
- Geant4/10.6.3-foss-2019b-noMT
- Geant4/10.6.3-fosscuda-2019b-noMT
- Geant4/11.0.2-foss-2019b
- Geant4/11.0.2-fosscuda-2022.07-noMT
- Geant4/11.0.2-foss-2019b
- 1Geant4/1.0.2-foss-2019b-noMT
- g4py/10.05
- mumax/3.10-GCCcore-8.3.0-CUDA-11.4.2
- Octopus/9.2-foss-2019b
- Octopus/10.3-foss-2019b
- OpenFAST/3.1.0-intel-2019b
- OpenFAST/3.3.0-intel-2019b
- PVMOS/0.48
- SCUFF-EM/0.96-intel-2018a
- VASP/5.4.1-intel-2019b
- Yambo/5.0.2-intel-2019b
- eudev/3.2.10-GCCcore-8.3.0
- CUDA-Toolkit/8.0.61
- CUDA-Toolkit/9.0.176
- CUDA-Toolkit/9.1.85
- CUDA/9.0.176
- CUDA/9.1.85
- CUDA-10.1.243-GCC-8.3.0
- CUDA/10.2.89-iccifort-2019b
- CUDA/10.2.89
- CUDA/11.4.2
- file/5.33-GCCcore-6.4.0
- hwloc/1.11.8-GCCcore-6.4.0
- OpenSSL/1.0.2t-GCCcore-6.4.0
- OpenSSL/1.1.0h-GCCcore-6.4.0
- foss/2016b
- foss/2019b
- fosscuda/2019b
- fosscuda/2022.07
- gcccuda/2019b
- gcccuda/2022.07
- gimpi/6.2016
- gompi/4.1.10
- gompi/5.2.01
- gompi/6.2.01
- gompi/2019b
- gompic/2019b
- gompic/2022.07
- gomkl/2019b
- goolf/4.1.10
- goolf/5.2.01
- goolf/6.2.01
- iimpi/2013b
- iompi/2019b
- iomkl/2019b
- imkl/2019b
- iimpi/2016b
- intel/2013b
- intel/2016b
- intel/2019b
- ansys/18.0
- awscli/1.27.64-GCCcore-8.3.0-Python-3.7.4
- bzip2/1.0.6-gimpi-6.2016
- bokeh/1.4.0-fosscuda-2019b-Python-3.7.4
- behave/1.2.6-intel-2019b-Python-3.7.4
- behave/1.2.7.dev2-intel-2019b-Python-3.7.4
- configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
- CONN/20a-MATLAB-2020a
- DB/18.1.32-GCCcore-8.3.0
- EasyBuild/3.0.0
- EasyBuild/3.6.1
- EasyBuild/3.8.1
- EasyBuild/3.9.0
- EasyBuild/3.9.2
- EasyBuild/3.9.3
- EasyBuild/4.1.2
- expat/2.2.0-gimpi-6.2016
- expat/2.2.7-GCCcore-8.3.0
- Ghostscript/9.19-intel-2016b
- Ghostscript/9.27-GCCcore-6.4.0
- gzip/1.10-GCCcore-8.3.0
- gpuRIR/03-2022-fosscuda-2019b-Python-3.7.4
- hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4
- hypothesis/6.14.6-GCCcore-8.3.0
- ImageJ/1.52q-Java-1.8
- IOzone/3.490-foss-2019b
- IPython/6.5.0-foss-2019b-Python-3.7.4
- IPython/7.13.0-foss-2019b-Python-3.7.4
- jq/1.6-GCCcore-8.3.0
- git/2.23.0-GCCcore-8.3.0-nodocs
- Inspector/2019.1
- libarchive/3.5.1-GCCcore-8.3.0
- Meson/0.50.0-intel-2018a-Python-3.7.0
- Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4
- Meson/0.55.1-GCCcore-8.3.0-Python-3.7.4
- Nextflow/20.10.0
- networkx/2.4-foss-2019b-Python-3.7.4
- networkx/2.4-fosscuda-2019b-Python-3.7.4
- networkx/2.6.3-fosscuda-2022.07
- Ninja/1.9.0-foss-2017b
- Ninja/1.9.0-GCCcore-8.3.0
- Ninja/1.10.0-GCCcore-8.3.0
- Ninja/1.10.2-GCCcore-8.3.0
- NCO/4.6.0-intel-2016b
- Oniguruma/6.9.8-GCCcore-8.3.0
- OSU-Micro-Benchmarks/5.6.2-gompi-2017b
- parallel/20160622-GCC-5.4.0-2.26
- parallel/20180422-intel-2018a
- parallel/20190222-GCCcore-6.4
- parallel/20210322-GCCcore-8.3.0
- patchelf/0.9-GCCcore-6.4.0
- pyroomacoustics/0.6.0-fosscuda-2019b-Python-3.7.4
- pyHyp/2.6.0-Singularity
- re2c/1.1.1-GCCcore-6.4.0
- re2c/1.2.1-GCCcore-8.3.0
- torchaudio/0.6.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.6.0
- tree/1.7.0
- tmux/3.0-rc5-GCCcore-6.4.0
- Singularity/2.5.2-GCCcore-6.4.0
- Singularity/2.6.1-GCCcore-6.4.0
- Spyder/5.0.0a2-foss-2019b-Python-3.7.4
- SPM/12.5_r7771-MATLAB-2020a
- UnZip/6.0-GCCcore-8.3.0
- util-linux/2.29-intel-2016b
- VTune/2019.1
- wheel/0.30.0-intel-2018a-Python-3.6.3
- wheel/0.31.1-foss-2017b-Python-3.6.3
- XZ/5.2.2-gimpi-6.2016
- XZ/5.2.2-intel-2016b
- yaml-cpp/0.6.3-GCCcore-8.3.0
- at-spi2-core/2.34.0-GCCcore-8.3.0
- at-spi2-atk/2.34.1-GCCcore-8.3.0
- ATK/2.24.0-intel-2016b
- ATK/2.24.0-intel-2019b
- ATK/2.34.1-GCCcore-8.3.0
- bwidget/1.9.14-GCCcore-8.3.0
- cairo/1.14.8-GCCcore-6.4.0
- cairo/1.16.0-GCCcore-6.4.0
- cairo/1.16.0-GCCcore-8.3.0
- cairo/1.17.2-GCCcore-8.3.0-snapshot
- cairomm/1.10.0-GCC-6.4.0-2.28
- cairomm/1.12.2-GCCcore-8.3.0
- cairomm/1.15.5-GCCcore-8.3.0
- FFmpeg/3.1.3-intel-2016b
- FFmpeg/4.2.1-GCCcore-8.3.0
- fiji/2.1.2
- fiji/20220414-conda
- fontconfig/2.12.1-gimpi-6.2016
- fontconfig/2.13.1-GCCcore-8.3.0
- fontconfig/2.13.92-GCCcore-8.3.0
- freetype/2.7.1
- freetype/2.6.5-gimpi-6.2016
- freetype/2.8.1-GCCcore-6.4.0
- freetype/2.9.1-GCCcore-6.4.0
- gettext/0.18.2-goolf-5.2.01
- gettext/0.19.8-gimpi-6.2016
- Gdk-Pixbuf/2.38.2-GCCcore-8.3.0
- GL2PS/1.4.0-foss-2017b
- GL2PS/1.4.0-GCCcore-6.4.0
- GL2PS/1.4.0-GCCcore-8.3.0
- GL2PS/1.4.2-GCCcore-8.3.0
- Glade/3.8.5-intel-2016b-Python-2.7.12
- GLib/2.49.5
- GLib/2.52.0-intel-2016b
- GLib/2.54.2-GCCcore-6.4.0
- GLib/2.60.1-GCCcore-6.4.0
- GLib/2.54.3-GCCcore-8.3.0
- GLib/2.62.0-GCCcore-8.3.0
- Graphviz/2.49.0-GCCcore-8.3.0-Java-11
- Graphviz/5.0.0-GCCcore-8.3.0-Python-3.7.4
- GraphicsMagick/1.3.25-intel-2016b
- GTK+/2.24.3-intel-2016b
- GTK+/3.24.13-GCCcore-8.3.0
- GTK+/3.22.30-fosscuda-2019b
- GTK+/3.24.23-GCCcore-8.3.0
- GTS/0.7.6-GCCcore-8.3.0
- gv/3.7.4
- ImageMagic/7.0.8-46-GCCcore-6.4.0
- ImageMagic/7.0.9-5-GCCcore-8.3.0
- inputproto/2.3-goolf-5.2.01
- JasPer/2.0.14-GCCcore-8.3.0
- JasPer/2.0.33-GCCcore-8.3.0
- kbproto/1.0.6-goolf-5.2.01
- libGLU/9.0.1-GCCcore-8.3.0
- libGLU/9.0.1-GCCcore-8.3.0-Mesa-20.0.2
- matplotlib/2.1.2-intel-2018a-Python-2.7.14
- matplotlib/2.1.2-intel-2018a-Python-3.6.3
- matplotlib/2.2.4-foss-2017b-Python-2.7.14
- matplotlib/3.0.3-intel-2018a-Python-3.6.3
- matplotlib/3.0.3-foss-2017b-Python-3.6.3
- matplotlib/3.1.1-foss-2019b-Python-3.7.4
- matplotlib/3.3.3-fosscuda-2019b-Python-3.7.4
- Mesa/17.2.5-foss-2017b
- Mesa/17.2.5-GCCcore-6.4.0
- Mesa/17.3.6-intel-2018a
- Mesa/18.1.1-GCCcore-6.4.0
- Mesa/19.0.1-GCCcore-6.4.0
- Mesa/19.1.4-GCCcore-6.4.0
- Mesa/20.0.2-GCCcore-8.3.0
- NiBabel/2.2.1-intel-2018a-Python-3.6.3
- NiBabel/3.2.0-foss-2019b-Python-3.7.4
- Nilearn/0.7.1-foss-2019b-Python-3.7.4
- OpenCV/3.1.0-intel-2016b
- OpenCV/3.3.0-foss-2017b-Python-3.6.3
- OpenCV/4.2.0-fosscuda-2019b-Python-3.7.4
- OpenCV/4.4.0-fosscuda-2019b-Python-3.7.4
- p4vasp/0.3.29-intel-2016b-Python-2.7.12
- p4vasp/0.3.30-Singularity
- ParaView/5.1.2-goolf-5.2.01-mpi
- ParaView/5.1.2-intel-2016b-mpi
- ParaView/5.6.2-foss-2019b-Python-3.7.4-mpi
- ParaView/5.6.2-intel-2019b-Python-3.7.4-mpi
- PCL/1.12.0-fosscuda-2019b-Python-3.7.4
- PyQt5/5.15.1-GCCcore-8.3.0
- scikit-image/0.17.1-fosscuda-2019b-Python-3.7.4
- scikit-image/0.13.0-intel-2016b-Python-2.7.12
- scikit-image/0.14.0-intel-2018a-Python-2.7.14
- scikit-image/0.14.0-intel-2018a-Python-3.6.3
- Tk/8.6.4-intel-2016b-no-X11
- Tk/8.6.5-gimpi-6.2016
- Tk/8.6.8-GCCcore-6.4.0
- torchvision/0.5.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
- torchvision/0.7.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.6.0
- torchvision/0.8.2-fosscuda-2019b-Python-3.7.4-PyTorch-1.7.0
- UDUNITS/2.2.20-intel-2016b
- gettext/0.19.8
- gnuplot/5.0.5-intel-2016b
- gnuplot/5.2.2-foss-2017b
- gnuplot/5.2.6-foss-2017b
- grace/5.1.25
- libICE/1.0.8-goolf-5.2.01
- libSM/1.2.1-goolf-5.2.01
- libX11/1.6.1-goolf-5.2.01
- libX11/1.6.3-intel-2016b
- libXaw/1.0.12-goolf-5.2.01
- libXpm/3.5.11-goolf-5.2.01
- libXt/1.1.4-goolf-5.2.01
- LittleCMS/2.9-GCCcore-6.4.0
- motif/2.3.6
- ncview/2.1.7-intel-2016b
- pixman/0.38.4-GCCcore-8.3.0
- Pillow-SIMD/6.0.x.post0-GCCcore-8.3.0
- PyCairo/1.10.0-intel-2016b-Python-2.7.12
- PyCairo/1.18.2-GCCcore-8.3.0
- PyCairo/1.19.1-GCCcore-8.3.0-Python-3.7.4
- PyGObject/2.28.6-intel-2016b-Python-2.7.12
- PyGObject/2.28.7-intel-2019b-Python-2.7.16
- PyGObject/3.34.0-GCCcore-8.3.0-Python-2.7.16
- PyGTK/2.24.0-intel-2016b-Python-2.7.12
- PyOpenGL/3.1.1a1-intel-2016b
- Togl/2.0-GCCcore-8.3.0
- VTK/8.1.0-intel-2018a-Python-2.7.14
- VTK/8.1.1-foss-2017b-Python-2.7.14
- VTK/8.2.0-foss-2019b-Python-3.7.4
- VTK/8.2.0-intel-2019b-Python-3.7.4
- VTK/9.0.1-fosscuda-2019b-Python-3.7.4
- VTK/9.0.1-fosscuda-2019b_master (more recent than 9.0.1 & bug-fixed)
- VTK/9.0.1-fosscuda-2019b-Qt5
- VTK/9.0.3-fosscuda-2019b-Qt5
- X11/20160819-goolf-5.2.01
- X11/20171023-GCCcore-6.4.0
- X11/20180604-GCCcore-6.4.0
- X11/20190311-GCCcore-6.4.0
- X11/20200222-GCCcore-8.3.0
- X11/20210518-GCCcore-8.3.0
- X11/all
- XCrySDen/1.6.2-intel-2019b
The list above is based on the information gathered by the command
module avail
If you want to create a list of every available software on the cluster, on your own, you can do this by simply using the command:
module spider
The available software will be listed in the format: name, version