SNAP-HMM is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.
Although the program is actually only called SNAP, it was installed with the suffix '-HMM' to distinguish it from the other SNAP version. You can find both version by typing in
module spider snap
The following versions of SNAP-HMM are installed and currently available...
... on environment hpc-env/8.3:
... on environment hpc-env/6.4:
To load the desired version of the module, use the module load command, e.g.
module load hpc-env/8.3 module load SNAP-HMM
To work with the data included in SNAP-HMM, you shold use the environment variable $EBROOTSNAPMINHMM which leads to the softwares' directory:
You can proceed according to the scheme snap <command>
snap $EBROOTSNAPMINHMM/HMM/thale $EBROOTSNAPMINHMM/DNA/thale.dna.gz snap $EBROOTSNAPMINHMM/HMM/worm $EBROOTSNAPMINHMM/DNA/worm.dna.gz