The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules. ¹
The following versions are installed and currently available...
... on environment hpc-env/8.3:
... on environment hpc-env/6.4:
- genometools/1.5.10-foss-2017b ## please mind the different upper/lower cases when loading the desired module
Loading / Using GenomeTools
To load the desired version of the module, use the module load command, e.g.
module load hpc-env/8.3 module load GenomeTools
Always remember: this command is case sensitive!
After loading the GenomeTools module, you can get some basic information by calling
GenomeTool(gt) will print out a list of all tools available. If you want to know more about one of the listed tools you can use the extended help function:
gt <tool_name> -help
A list of documentations and manuals can be found here.