HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). HISAT2 is the successor of HISAT and [TopHat 2016 | TopHat2].
The currently installed version is available on environment hpc-env/6.4:
If you want to find out more about HISAT2 on the HPC Cluster, you can use the command
module spider HISAT2
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load HISAT2
Always remember: this command is case sensitive!
To get familiar with the commands and options available for HISAT2, you can use the help function:
The program's website can be found here.