Dmipy 2016

Introduction

Dmipy: Diffusion Microstructure Imaging in Python The Dmipy software package facilitates the reproducible estimation of diffusion MRI-based microstructure features. It does this by taking a completely modular approach to Microstructure Imaging. Using Dmipy you can design, fit, and recover the parameters of any multi-compartment microstructure model in usually less than 10 lines of code. Created models can be used to simulate and fit data for any PGSE-based dMRI acquisition, including single shell, multi-shell, multi-diffusion time and multi-TE acquisition schemes. ¹

Installed version(s)

The following versions are installed and currently available...

... on environment hpc-env/8.3:

• dmipy/1.0.5-foss-2019b-Python-3.7.4

Loading / Using dmipy

To load the desired version of the module, use the module load command, e.g.

module load hpc-env/8.3
module load dmipy

Always remember: this command is case sensitive!

If you want to find out more about dmipy on the HPC cluster, you can use the command

module spider dmipy

This will show you basic information e.g. a short description and the currently installed version.

Documentation

The full documentation can be found here. Although this ist just a github page, the developers offer a wide variety of tutorials, bundles and more.