Pychopper 2016
From HPC users
Jump to navigationJump to search
Introduction
Pychopper is a tool to identify, orient and trim full-length Nanopore cDNA reads. The tool is also able to rescue fused reads. [1]
Installed version
The currently installed version is available on environment hpc-env/6.4:
Pychopper/0.4.0-intel-2018a-Python-3.7.0
Using Pychopper
If you want to find out more about Pychopper on the HPC Cluster, you can use the command
module spider Pychopper
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load Pychopper
Always remember: this command is case sensitive!
To get an overview about the basic commands type as follows (after loading the modules):
cdna_classifier.py -h
Documentation
The repository and the corresponding README file can be found here.
