MaSuRCA 2016

Introduction

MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454, Pacbio and Nanopore).

Installed version

The currently installed version is available on ... ... environment hpc-env/6.4:

MaSuRCA/3.2.4-GCCcore-6.4.0
MaSuRCA/3.3.0-foss-2017b-Perl-5.26.0

... environment hpc-env/8.3:

MaSuRCA/4.0.9-foss-2019b-Perl-5.30.0

Using MaSuRCA

If you want to find out more about MaSuRCA on the HPC Cluster, you can use the command

module spider MaSuRCA

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env 6.4
module load MaSuRCA

Always remember: this command is case sensitive!

Documentation

The full documentation can be found [ here].