STAR 2016

From HPC users
Jump to navigationJump to search

Introduction

STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays

Installed version

These versions are installed and and currently available ...

... on envirnoment hpc-uniol-env:

STAR/2.5.4b-intel-2016b

... on environment hpc-env/6.4:

STAR/2.6.1d-foss-2017b

... on environment hpc-env/8.3:

STAR/2.7.10a-GCC-8.3.0

Using STAR

If you want to find out more about STAR on the HPC Cluster, you can use the command

module spider STAR

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env/8.3
module load STAR

Always remember: this command is case sensitive!

Documentation

A short summary about the functions and benefits of STAR can be read here
The full documentation can be found here (pdf reader required).