Difference between revisions of "HPC User Wiki 2016"
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*[[FreeSurfer 2016 | FreeSurfer]] | *[[FreeSurfer 2016 | FreeSurfer]] | ||
*[[FSL 2016 | FSL]] | *[[FSL 2016 | FSL]] | ||
*[[GATK]] | |||
*[[GeneMark-EX 2016 | GeneMark-EX]] | *[[GeneMark-EX 2016 | GeneMark-EX]] | ||
*[[GffCompare 2016 | GffCompare]] | *[[GffCompare 2016 | GffCompare]] | ||
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*[[TopHat 2016 | TopHat]] | *[[TopHat 2016 | TopHat]] | ||
*[[Trinity]] | *[[Trinity]] | ||
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*[[Trimmomatic]] | |||
*[[VCFTools]] | *[[VCFTools]] | ||
*[[ViennaRNA]] | *[[ViennaRNA]] | ||
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* [[Gurobi 2016 | Gurobi]] | * [[Gurobi 2016 | Gurobi]] | ||
Revision as of 10:54, 11 July 2019
Documentation for High-Performance Computing at the University Oldenburg
This is the HPC User Wiki for the HPC clusters CARL and EDDY. If you would like to contribute please contact Scientific Computing!
General Information
---------------------- FAQ - Frequently Asked Questions ----------------------
---------------------- Want to stay in contact with the HPC support and other users? Join our Mattermost group! ----------------------
| HPC Facilities | Quickstart Guide | User environment | Job Management (Queueing) System |
|---|---|---|---|
Application Software and Libraries
---------------------- What's installed and what's new? ----------------------
| Compiler and Development Tools | Quantum Chemistry | Biology & Medicine | Mathematics/Scripting | |
|---|---|---|---|---|
| Libraries | Physics | Machine Learning | Computational Fluid Dynamics | Visualisation |
|---|---|---|---|---|
Courses and Tutorials
Below you can find a list of Courses and Tutorials for our HPC clusters. Currently, a short, two hour introduction for the new clusters CARL and EDDY is planned. During the summer semester a lecture "Introduction to HPC" is held (2h/week). If you are interested in attending or would like to request a course please contact Scientific Computing.
| Courses and Workshops | Lectures | Tutorials |
|---|---|---|
|
Contact
In case you need HPC support you can use the contacts listed below. The servicedesk of IT services can be contacted for all questions regarding HPC, and are recommended in particular when someone is absent (e.g. due to a vacation).
| HPC Resource | Name | |
|---|---|---|
| CARL and EDDY | General HPC Support and Servicedesk |
hpcsupport@uni-oldenburg.de servicedesk@uni-oldenburg.de |
| CARL | Stefan Harfst Fynn Schwietzer |
stefan.harfst@uni-oldenburg.de fynn.schwietzer1@uni-oldenburg.de |
| EDDY | Wilke Trei | wilke.trei@forwind.de |
The old wiki for HERO and FLOW is found here.
HPC Support Internal
