Installed Application Software and Libraries

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Revision as of 10:38, 11 July 2019 by Schwietzer (talk | contribs) (Java 8)
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Introduction

This page was created to give you an overview of the installed software on the cluster (name/version). The list will be updated at least once per week.

If you find a program in this list, but cant find it on the cluster (for example when looking at the output of the command module avail) it has most likely been hidden. Its also possible that a module isnt listed here because it is hidden. You can find every hidden module here: /cm/shared/uniol/modules/.hidden. If you want to access a hidden module, you have to add a "." in front of the version number, e.g.: 

[abcd1234@hpcl001 ~]$ module load PCRE/8.39-intel-2016b
Lmod has detected the following error:  The following module(s) are unknown: "PCRE/8.39-intel-2016b"

Please check the spelling or version number. Also try "module spider ..."

[abcd1234@hpcl001 ~]$ module load PCRE/.8.39-intel-2016b
[abcd1234@hpcl001 ~]$ ml 

Currently Loaded Modules:
 1) hpc-uniol-env   3) icc/2016.3.210   5) binutils/.2.26-GCCcore-5.4.0   7) impi/5.1.3.210   9) imkl/11.3.3.210  11) PCRE/.8.39-intel-2016b
 2) slurm/current   4) GCCcore/.5.4.0   6) ifort/2016.3.210               8) iimpi/2016b     10) intel/2016b

Latest installed programs and version updates

To keep you up to date, all newly installed programs and version updates of the last two to three months (ca.) are listed in this section. Every new program will be installed in the new environment hpc-env/6.4 from now on.


Software Version Toolchain Date of Installation
HDF5 1.10.5 10/07/2019
QUAST 5.0.2 foss/2017b 10/07/2019
Ghostscript 9.27 10/07/2019
OpenFoam 7 gimkl/2018a 10/07/2019
ImageMagic 7.0.8-46 GCCcore/6.4.0 10/07/2019
SQLite 3.28.0 GCCcore/6.4.0 10/07/2019
MariaDB 10.3.10 foss/2017b 21/06/2019
mysqlclient 1.4.2 foss/2017b 21/06/2019
REPET 2.5 foss/2017b 20/06/2019
RECON 1.08 foss/2017b 19/06/2019
HMMER 3.2.1 foss/2017b 19/06/2019
gnuplot 5.2.6 foss/2017b 04/06/2019
canu 1.8 foss/2017b 04/06/2019
parallel 20190222 GCCcore/6.4.0 21/05/2019
BayeScan 2.1 intel-2018a 14/05/2019
FDTD Solutions 8.21.1933 GCCcore/6.4.0 08/05/2019
Mesa 19.0.1 GCCcore/6.4.0 08/05/2019
X11 20190311 GCCcore/6.4.0 07/05/2019

Installed Software

/cm/local/modulefiles

  • cluster-tools/7.3
  • cmd
  • dot
  • freeipmi/1.5.2
  • gcc/6.1.0
  • ipmitool/1.8.17
  • module-git
  • module-info
  • openldap
  • shared

/cm/shared/uniol/modules/core

  • hpc-uniol-env (L)
  • slurm/current (L)

/cm/shared/uniol/modules/bio

/cm/shared/uniol/modules/cfd

/cm/shared/uniol/modules/chem

/cm/shared/uniol/modules/compiler

  • CUDA-Toolkit/8.0.44
  • CUDA-Toolkit/recent
  • GCC/4.9.4-2.25
  • GCC/5.4.0-2.26
  • GCC/6.2.0-2.27 (D)
  • Go/1.11.5
  • LLVM/3.8.1-goolf-5.2.01
  • LLVM/3.8.1-intel-2016b
  • LLVM/3.8.1-gimpi-6.2016
  • LLVM/3.9.0-intel-2016b
  • LLVM/5.0.0-foss-2017b
  • LLVM/5.0.0-GCCcore-6.4.0
  • LLVM/6.0.0-GCCcore-6.4.0
  • LLVM/7.0.0-GCCcore-6.4.0 (D)
  • NAG_Fortran/5.2
  • PGI/12.10
  • PGI/15.10
  • PGI/16.10 (D)
  • icc/2016.3.210
  • ifort/2016.3.210

/cm/shared/uniol/modules/data

  • ANTs/2.2.0-foss-2017b-Python-2.7.14
  • CDO/1.7.2-intel-2016b
  • HDF/4.2.11-intel-2016b
  • HDF/4.2.12-gimkl-7.2017.3
  • HDF/4.2.12-goolf-7.2.11
  • HDF5/1.8.17-intel-2016b
  • HDF5/1.10.1-foss-2017b
  • HDF5/1.10.1-intel-2018a
  • HDF5/1.10.2-gimkl-2018a
  • HDF5/1.10.2-intel-2018a
  • HDF5/1.10.5-intel-2018a
  • MariaDB/10.3.10-foss-2017b
  • merra2wrf/2.0
  • NCL/6.3.0-intel-2016b
  • g2clib/1.4.0-intel-2016b
  • g2lib/1.4.0-intel-2016b
  • grib_api/1.16.0-intel-2016b
  • netCDF/4.4.1-intel-2016b
  • netCDF/4.4.1-intel-2016b-with-HDF4
  • netCDF-Fortran/4.4.4-intel-2016b
  • netCDF-Fortran/4.4.4-intel-2016b-with-HDF4
  • netCDF/4.6.1-gimkl-2018a
  • netCDF/4.6.1-intel-2018a
  • netCDF-Fortran/4.4.4-intel-2018a
  • netCDF-C++/4.3.0-intel-2018a
  • PyTables/3.5.1-foss-2017b-Python-2.7.14
  • PyTables/3.5.1-foss-2017b-Python-3.6.3
  • ROOT/v5.34.36
  • ROOT/v6.08.02

/cm/shared/uniol/modules/devel

  • ALE/0.6.0-GCCcore-6.4.0
  • Autoconf/2.69-gimpi-6.2016
  • Autoconf/2.69-gimpi-6.2016
  • Automake/1.16.1-GCCcore-6.4.0
  • Autotools/20150215
  • Autotools/20150215-gimpi-6.2016
  • Autotools/20170619-GCCcore-6.4.0
  • Autotools/20180311-GCCcore-6.4.0
  • ant/1.10.1-Java-1.8.0_172
  • Boost/1.61.0-gimpi-6.2016
  • Boost/1.61.0-goolf-5.2.01
  • Boost/1.61.0-intel-2016b
  • Boost/1.64.0-intel-2017a
  • Boost/1.65.1-foss-2017b-Python-3.6.3
  • Boost/1.66.0-intel-2018a
  • Boost/1.67.0-foss-2017b-Python-2.7.14
  • catkin/0.7.14-foss-2017b-Python-2.7.14
  • catkin-dep/1.0-foss-2017b-Python-2.7.14
  • CMake/2.8.12
  • CMake/3.6.2 (D)
  • CMake/3.5.2-gimpi-6.2016
  • CMake/3.6.1-gimpi-6.2016
  • CMake/3.9.1-GCCcore-6.4.0
  • CMake/3.9.5-GCCcore-6.4.0
  • CUDA-Profiler/8.0.44
  • CUDA-Visual-Profiler/8.0.44
  • Cube/4.3.4
  • GObject-Introspection/1.52.0-intel-2016b
  • gtest/1.8.0-GCCcore-6.4.0
  • intltool/0.51.0-foss-2017b-Perl-5.26.0
  • intltool/0.51.0-GCCcore-6.4.0-Perl-5.26.0
  • intltool/0.51.0-intel-2018a-Perl-5.26.0
  • intltool/0.51.0-intel-2018a-Perl-5.28.0
  • intltool/0.51.0-intel-2018a
  • libXmu/1.1.2-goolf-5.2.01
  • LZO/2.10-foss-2017b
  • M4/1.4.17
  • M4/1.4.17-gimpi-6.2016
  • Mako/1.0.4-gimpi-6.2016-Python-2.7.12
  • Mako/1.0.7-foss-2017b-Python-3.6.3
  • Mako/1.0.7-intel-2018a-Python-2.7.14
  • Mako/1.0.8-intel-2018a-Python-2.7.14
  • Mako/1.0.8-intel-2018a-Python-3.7.0
  • ncurses/6.0
  • ncurses/6.0-gimpi-6.2016
  • Nvidia-Tesla-GDK/352.79
  • OTF2/2.0
  • PCRE/8.40
  • pkg-config/0.29.1-gimpi-6.2016
  • Qt/4.8.7-goolf-5.2.01
  • Qt/4.8.7-intel-2016b
  • Qt/5.8.0-GCCcore-6.4.0
  • Qt/5.12.1-foss-2017b
  • ROS/1.14.4-foss-2017b-Python-2.7.14
  • SQLite/3.9.2-intel-2016b
  • SQLite/3.13.0-goolf-5.2.01
  • SQLite/3.13.0-intel-2016b
  • SQLite/3.19.3
  • SQLite/3.20.1-GCCcore-6.4.0
  • SQLite/3.23.0-intel-2018a
  • SQLite/3.28.0-GCCcore-6.4.0
  • Spark/2.4.0-intel-2018a-Hadoop-2.7
  • SWIG/3.0.8-intel-2016b-Python-2.7.12
  • SWIG/3.0.12-Python-3.6.1
  • Scalasca/2.3
  • Valgrind/3.12.0
  • xbitmaps/1.1.1
  • xcb-proto/1.7-goolf-5.2.01-Python-2.7.3
  • xextproto/7.2.1-goolf-5.2.01
  • xproto/7.0.23-goolf-5.2.01
  • xtrans/1.2-goolf-5.2.01
  • xorg-macros/1.19.0

/cm/shared/uniol/modules/lang

  • Anaconda3/4.3.0
  • Anaconda3/ 5.1.0
  • Bison/3.0.4
  • Bison/3.0.4-gimpi-6.2016
  • Gurobi/7.0.2
  • flex/2.6.0-gimpi-6.2016
  • flex/2.6.4-GCCcore-6.4.0
  • Java/8.112
  • Java/1.8
  • Java/1.8.0_172
  • Java/1.8.0_192
  • Java/11.0.2
  • Julia/1.0.1-intel-2018a-Perl-5.28.0
  • nodejs/4.4.7-intel-2016b
  • Perl/5.20.3
  • Perl/5.26.0-foss-2017b
  • Perl/5.26.0-GCCcore-6.4.0
  • Perl/5.28.0-GCCcore-6.4.0
  • Python/2.7.3-goolf-5.2.01
  • Python/2.7.11-intel-2016b
  • Python/2.7.12
  • Python/2.7.14-intel-2018a
  • Python/2.7.14-foss-2017b
  • Python/3.5.2 (D)
  • Python/3.6.1-goolf-5.2.01
  • Python/3.6.3-foss-2017b
  • Python3.6.3-intel-2018a
  • Python/3.7.0-foss-2017b
  • Python/3.7.0-intel-2018a
  • R/3.3.1
  • R/3.4.3
  • R/3.5.2
  • ScientificPython/2.9.4-Python-2.7.12 (D)
  • TCL/8.6.4-intel-2016b
  • TCL/8.6.5
  • TCL/Tcl/8.6.7-GCCcore-6.4.0
  • TCL/Tcl/8.6.8-GCCcore-6.4.0
  • Tkinter/2.7.14-foss-2017b-Python-2.7.14
  • Tkinter/2.7.14-intel-2018a-Python-2.7.14
  • Tkinter/3.6.3-intel-2018a-Python-3.6.3
  • Yasm/1.3.0

/cm/shared/uniol/modules/lib

  • Blosc/1.14.4-GCCcore-6.4.0
  • CFITSIO/3.410
  • CUDA-Blas/8.0.44
  • CUDA-FFT/8.0.44
  • GlobalArrays/5.4b-intel-2016b
  • ICU/61.1-GCCcore-6.4.0
  • ICU/64.2-GCCcore-6.4.0
  • jemalloc/5.1.0-GCCcore-6.4.0
  • libdrm/2.4.70-gimpi-6.2016
  • libffi/3.2.1-gimpi-6.2016
  • libglade/2.6.4-intel-2016b
  • libharu/2.3.0-intel-2016b
  • libjpeg-turbo/1.5.2-GCCcore-6.4.0
  • libjpeg-turbo/2.0.2-GCCcore-6.4.0
  • libtool/2.4.6
  • libtool/2.4.6-gimpi-6.2016
  • libpng/1.6.24
  • libpng/1.6.24-gimpi-6.2016
  • libreadline/6.3-gimpi-6.2016
  • libreadline/6.2-goolf-5.2.01
  • libreadline/7.0-GCCcore-6.4.0
  • libreadline/8.0-GCCcore-6.4.0
  • libunwind/1.2.1-GCCcore-6.4.0
  • libxcb/1.8-goolf-5.2.01-Python-2.7.3
  • libXft/2.3.2-intel-2016b
  • libxml2/2.9.4
  • libxml2/2.9.4-gimpi-6.2016
  • libXpm/3.5.11-goolf-5.2.01
  • libXpm/3.5.11-intel-2016b
  • libyaml/0.1.7-GCCcore-6.4.0
  • libyaml/0.2.2-GCCcore-6.4.0
  • mysqlclient/1.4.2-foss-2017b-Python-2.7.14
  • nettle/3.2-gimpi-6.2016
  • nettle/3.3-GCCcore-6.4.0
  • nettle/3.4.1-GCCcore-6.4.0
  • path.py/8.2.1-intel-2016b-Python-3.5.2
  • pyYAML//3.12-intel-2018a-Python-3.6.3
  • PyYAML/3.13-foss-2017b-Python-3.6.3
  • PyYAML/5.1-foss-2017b-Python-2.7.14
  • SDL2/2.0.8-GCCcore-6.4.0
  • SDL2/2.0.8-intel-2018a
  • SIONlib/1.6.1
  • testpath/0.3-intel-2016b-Python-3.5.2
  • Xerces-C++/3.1.3
  • xforms/1.2.4
  • zlib/1.2.7-goolf-5.2.01
  • zlib/1.2.8
  • zlib/1.2.8-gimpi-6.2016
  • zlib/1.2.11
  • zlib/1.2.11-GCCcore-6.4.0
  • zoltan/3.83

/cm/shared/uniol/modules/math

  • Eigen/3.2.9-gimpi-6.2016
  • bgc/1.03-intel-2018a
  • GMP/6.1.0-intel-2016b
  • GMP/6.1.1
  • METIS/5.1.0-gimpi-6.2016 (D)
  • NEURON/7.5-intel-2016b
  • NEURON/7.6.2-intel-2018a
  • numexpr/2.6.5-foss-2017b-Python-3.6.3
  • MPFR/3.1.4
  • SCOTCH/6.0.4-gimpi-6.2016 (D)
  • Theano/1.0.1-foss-2017b-Python-3.6.3

/cm/shared/uniol/modules/mpi

  • OpenMPI/1.10.4-GCC-4.9.4
  • OpenMPI/2.0.1-GCC-5.4.0
  • OpenMPI/2.0.1-GCC-6.2.0
  • OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
  • impi/5.1.3.210

/cm/shared/uniol/modules/numlib

  • ATLAS/3.10.2
  • Armadillo/7.500.1
  • CGAL/4.8.1-gimpi-6.2016
  • CLHEP/2.1.3.1
  • CLHEP/2.2.0.4
  • CLHEP/2.3.1.1
  • CLHEP/2.3.4.3
  • cuDNN/5.1-CUDA-8.0.44
  • cvx/2.1
  • Eigen/3.2.9
  • Eigen/3.2.9-gimpi-6.2016
  • FFTW/3.3.5-gompi-5.2.01
  • FIAT/1.6.0-intel-2016b-Python-2.7.12
  • GMP/6.1.1 (D)
  • GSL/2.1-intel-2016b
  • GSL/2.3-goolf-6.2.01
  • GSL/2.3-intel-2016b
  • GSL/2.4-GCCcore-6.4.0
  • GSL/2.4-goolf-7.2.11
  • Hypre/2.11.1
  • imkl/11.3.3.210
  • leda/6.3
  • LinBox/1.4.0
  • maple/18
  • maple/2016 (D)
  • MATLAB/2016b
  • MATLAB/2017b
  • MATLAB/2018b
  • MPFR/3.1.4
  • NLopt/2.4.2-foss-2017b
  • NLopt/2.4.2-intel-2018a
  • NLopt/2.6.1-GCCcore-6.4.0
  • NTL/9.8.1
  • Octave/4.0.3
  • [[BLAS and LAPACK 2016 | OpenBLAS]/0.2.19
  • [[BLAS and LAPACK 2016 | OpenBLAS]/0.2.20-GCC-6.4.0-2.28
  • Qhull/2015.2
  • ScaLAPACK/2.0.2
  • SuiteSparse/4.5.3
  • SuiteSparse/4.5.3-intel-2018a-METIS-5.1.0
  • SuiteSparse/5.2.0-intel-2016b-METIS-5.1.0
  • SuiteSparse/5.2.0-intel-2018a-METIS-5.1.0
  • stata/13

/cm/shared/uniol/modules/phys

/cm/shared/uniol/modules/toolchain

/cm/shared/uniol/modules/tools

  • ansys/18.0
  • bzip2/1.0.6-gimpi-6.2016
  • configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
  • EasyBuild/3.0.0
  • EasyBuild/3.6.1
  • EasyBuild/3.8.1
  • EasyBuild/3.9.0
  • EasyBuild/3.9.2
  • EasyBuild/3.9.3
  • expat/2.2.0-gimpi-6.2016
  • Ghostscript/9.19-intel-2016b
  • Ghostscript/9.27-GCCcore-6.4.0
  • NCO/4.6.0-intel-2016b
  • Meson/0.50.0-intel-2018a-Python-3.7.0
  • parallel/20160622-GCC-5.4.0-2.26
  • parallel/20180422-intel-2018a
  • parallel/20190222-GCCcore-6.4.
  • tree/1.7.0
  • Singularity/2.4.2-GCCcore-6.4.0
  • Singularity/2.5.2-GCCcore-6.4.0
  • util-linux/2.29-intel-2016b
  • XZ/5.2.2-gimpi-6.2016
  • XZ/5.2.2-intel-2016b

/cm/shared/uniol/modules/vis

  • ATK/2.24.0-intel-2016b
  • cairo/1.14.8-GCCcore-6.4.0
  • cairo/1.16.0-GCCcore-6.4.0
  • cairomm/1.10.0-GCC-6.4.0-2.28
  • FFmpeg/3.1.3-intel-2016b
  • fontconfig/2.12.1-gimpi-6.2016
  • freetype/2.7.1
  • freetype/2.6.5-gimpi-6.2016
  • freetype/2.8.1-GCCcore-6.4.0
  • freetype/2.9.1-GCCcore-6.4.0
  • gettext/0.18.2-goolf-5.2.01
  • gettext/0.19.8-gimpi-6.2016
  • Glade/3.8.5-intel-2016b-Python-2.7.12
  • GLib/2.49.5
  • GLib/2.52.0-intel-2016b
  • GLib/2.54.2-GCCcore-6.4.0
  • GLib/2.60.1-GCCcore-6.4.0
  • GraphicsMagick/1.3.25-intel-2016b
  • GTK+/2.24.3-intel-2016b
  • gv/3.7.4
  • ImageMagic/7.0.8-46-GCCcore-6.4.0
  • inputproto/2.3-goolf-5.2.01
  • kbproto/1.0.6-goolf-5.2.01
  • matplotlib/2.1.2-intel-2018a-Python-2.7.14
  • matplotlib/2.1.2-intel-2018a-Python-3.6.3
  • matplotlib/2.2.4-foss-2017b-Python-2.7.14
  • Mesa/17.2.5-foss-2017b
  • Mesa/17.2.5-GCCcore-6.4.0
  • Mesa/17.3.6-intel-2018a
  • Mesa/18.1.1-GCCcore-6.4.0
  • Mesa/10.0.1-GCCcore-6.4.0
  • OpenCV/3.1.0-intel-2016b
  • p4vasp/0.3.29-intel-2016b-Python-2.7.12
  • ParaView/5.1.2-goolf-5.2.01-mpi
  • ParaView/5.1.2-intel-2016b-mpi (D)
  • Tk/8.6.4-intel-2016b-no-X11
  • Tk/8.6.5-gimpi-6.2016
  • Tk/8.6.8-GCCcore-6.4.0
  • UDUNITS/2.2.20-intel-2016b
  • gettext/0.19.8
  • gnuplot/5.0.5-intel-2016b
  • gnuplot/5.2.2-foss-2017b
  • gnuplot/5.2.6-foss-2017b
  • grace/5.1.25
  • libICE/1.0.8-goolf-5.2.01
  • libSM/1.2.1-goolf-5.2.01
  • libX11/1.6.1-goolf-5.2.01
  • libX11/1.6.3-intel-2016b
  • libXaw/1.0.12-goolf-5.2.01
  • libXpm/3.5.11-goolf-5.2.01
  • libXt/1.1.4-goolf-5.2.01
  • LittleCMS/2.9-GCCcore-6.4.0
  • motif/2.3.6
  • ncview/2.1.7-intel-2016b
  • PyCairo/1.10.0-intel-2016b-Python-2.7.12
  • PyGObject/2.28.6-intel-2016b-Python-2.7.12
  • PyGTK/2.24.0-intel-2016b-Python-2.7.12
  • PyOpenGL/3.1.1a1-intel-2016b
  • VTK/8.1.0-intel-2018a-Python-2.7.14
  • VTK/8.1.1-foss-2017b-Python-2.7.14
  • X11/20160819-goolf-5.2.01
  • X11/20171023-GCCcore-6.4.0
  • X11/20180604-GCCcore-6.4.0
  • X11/20190311-GCCcore-6.4.0
  • X11/all

The list above is based on the information gathered by the command 

module avail

If you want to create a list of every available software on the cluster, on your own, you can do this by simply using the command: 

module spider

The available software will be listed in the format: name, version

Retrieved from "https://wiki.hpcuser.uni-oldenburg.de/index.php?title=Installed_Application_Software_and_Libraries&oldid=4964"