Installed Application Software and Libraries

Introduction

This page was created to give you an overview of the installed software on the cluster (name/version). The list will be updated at least once per week.

If you find a program in this list, but cant find it on the cluster (for example when looking at the output of the command module avail) it has most likely been hidden. Its also possible that a module isnt listed here because it is hidden. You can find every hidden module here: /cm/shared/uniol/modules/.hidden. If you want to access a hidden module, you have to add a "." in front of the version number, e.g.:

[abcd1234@hpcl001 ~]$ module load PCRE/8.39-intel-2016b
Lmod has detected the following error:  The following module(s) are unknown: "PCRE/8.39-intel-2016b"

Please check the spelling or version number. Also try "module spider ..."

[abcd1234@hpcl001 ~]$ module load PCRE/.8.39-intel-2016b
[abcd1234@hpcl001 ~]$ ml 

Currently Loaded Modules:
 1) hpc-uniol-env   3) icc/2016.3.210   5) binutils/.2.26-GCCcore-5.4.0   7) impi/5.1.3.210   9) imkl/11.3.3.210  11) PCRE/.8.39-intel-2016b
 2) slurm/current   4) GCCcore/.5.4.0   6) ifort/2016.3.210               8) iimpi/2016b     10) intel/2016b

Latest installed programs and version updates

To keep you up to date, all newly installed programs and version updates of the last two to three months (ca.) are listed in this section. Since early 2020, every new program is installed in the new environment hpc-env/8.3.

Software	Version	Toolchain	Date of Installation (D/M/Y)
TOGA	1.0	intel/2019b	24/11/2020
FSL	6.0.4	fosscuda	23/11/2020
NextFlow	20.10.0	SYSTEM	20/11/2020
CESAR	2.0_25-08-2020	intel/2019b	19/11/2020
ipyrad	0.9.62	foss/2019b	11/11/2020
QuantumESPRESSO	6.6	intel/2019b	22/10/2020
Keras	2.4.3	fosscuda/2019b	21/20/2020
TensorFlow	2.3.1	fosscuda/2019b	20/10/2020
GATK	4.1.8.1	GCCcore/8.3.0	09/10/2020
CP2K	7.1	intel/2019b	22/09/2020
ELPA	2019.11.001	intel/2019b	22/10/2020
MOLGW	2.D	intel/2019b	15/09/2020
OpenCV	4.2.0 & 4.4.0	fosscuda/2019b	11/09/2020
torchvision	0.7.0	fosscuda/2019b	09/09/2020
scikit-learn	0.23.2	fosscuda/2019b	09/09/2020
scikit-learn	0.23.2	intel/2019b	07/09/2020

Installed Software

/cm/local/modulefiles

• cluster-tools/7.3
• cmd
• dot
• freeipmi/1.5.2
• gcc/6.1.0
• ipmitool/1.8.17
• module-git
• module-info
• openldap
• shared

/cm/shared/uniol/modules/core

• hpc-uniol-env (L)
• slurm/current (L)

/cm/shared/uniol/modules/bio

• AUGUSTUS/3.2.3-intel-2016b-Python-2.7.12
• AUGUSTUS/3.2.3-intel-2018a-Python-2.7.14
• AUGUSTUS/3.3-intel-2018a
• AUGUSTUS/3.3.2-intel-2018a
• bam_to_mate_hist/2018.09-intel-2018a-Python-2.7.14
• bam_to_mate_hist/2018.11-intel-2018a-Python-2.7.14
• BayeScan/2.1-intel-2018a
• bcl2fastq2/2.18.0.12
• bcl2fastq2/2.19.0
• BEDTools/2.26.0
• BEDTools/2.29.2-GCC-8.3.0
• BLAST/2.2.26
• BLAST/2.6.0 (D)
• BLAST+/2.7.1-foss-2017b-Python-2.7.14
• BLAST+/2.7.1-intel-2018a
• BLAT/3.5
• BamTools/2.4.0
• BamTools/2.4.1-intel-2018a
• BamTools/2.5.1-intel-2018a
• BamTools/2.5.1-foss-2019b
• BamTools/2.5.1-GCC-8.3.0
• BamTools/2.5.1-foss-2019b
• BBMap/38.61b-foss-2017b
• BCFtools/1.3.1
• BCFtools/1.9-foss-2019b
• BCFtools/1.6
• Beast/2.4.5
• BioPerl/1.7.0
• BioPerl/1.7.2-foss-2017b-Perl-5.26.0
• Biopython/1.68
• Biopython/1.71-intel-2018a-Python-3.7.0
• Biopython/1.71-intel-2018a-Python-2.7.14
• Biopython/1.73-foss-2017b-Python-3.6.3
• Bowtie/1.1.2
• Bowtie/1.2.2-intel-2018a
• Bowtie2/2.2.9
• Bowtie2/2.3.2-intel-2017a
• Bowtie2/2.3.4.1-intel-2018a
• Bowtie2/2.3.4.3-foss-2017b
• Bowtie2/2.3.5.1-GCC-6.4.0-2.28
• Bowtie2/2.4.1-GCC-8.3.0
• BRAKER2/2.1.2
• BRAKER2/2.1.4
• bwa.kit/0.7.12
• bwa.kit/0.7.17
• BWA/0.7.17-GCC-8.3.0
• bwa-mem2/2.0pre1-GCCcore-6.4.0
• caffe_unet/99bd99795d-intel-2016b-Python-2.7.12
• canu/canu/1.7-intel-2016b
• canu/canu/1.8-foss-2017b-Perl-5.28.0
• CD-HIT/4.6.4
• CESAR/2.0-intel-2019b_25-08-2020
• ConnectomeWorkbench /1.3.2-GCCcore-8.3.0
• cutadapt/1.9.1
• Exonerate/2.4.0-foss-2017b
• Exonerate/2.4.0-intel-2018a
• FASTX-Toolkit/0.0.14
• FastQC/0.11.5
• FASTA/36.3.8h-GCCcore-6.4.0
• FASTA/36.3.5e-GCCcore-6.4.0
• FreeSurfer/7.1.0
• FreeSurfer/6.0.1
• FSL/6.0.0-foss-2017b
• FSL/6.0.3-foss-2019b-Python-3.7.4
• FSL/6.0.4-fosscuda-2019b-Python-3.7.4
• GATK/3.7-Java-8.112
• GATK/4.1.4.1-GCCcore-8.3.0-Java-8
• GATK/4.1.8.1-GCCcore-8.3.0-Java-8
• GeneMark-EX/4.33
• genometools/1.5.10-foss-2017b
• GffCompare/0.10.1-foss-2017b
• GffCompare/0.10.6-foss-2017b
• gffread/0.9.12-foss-2017b
• GROMACS/5.1.4-intel-2016b-mt
• HTSlib/1.5-intel-2017a
• HTSlib/1.8-foss-2017b
• HTSlib/1.8-intel-2018a
• HTSlib/1.9-foss-2017b
• HISAT2//2.1.0-intel-2018a
• HMMER/3.2.1-foss-2017b
• IGV/2.3.80
• IGVTools/2.3.75
• ipyrad/0.9.62-foss-2019b-Python-3.7.4
• KNIME
• Lighter/1.0
• lpsolve/5.5.2.5-intel-2016b
• lpsolve/5.5.2.5-intel-2018a
• Lumpy/0.1
• MaSuRCA/3.2.4-GCCcore-6.4.0
• MaSuRCA/3.3.0-foss-2017b-Perl-5.26.0
• MCL/14.137-foss-2017b
• medaka/0.9.2-foss-2017b-Python-3.6.3
• medaka/0.10.1-foss-2017b-Python-3.6.3
• Mindboggle/1.2.4-foss-2017b-Python-3.6.3
• minimap2/2.13-foss-2017b
• MIRTK/2020.04-foss-2019b
• MrBayes/3.2.6-foss-2017b
• MultiQC/1.7-intel-2018a-Python-3.6.3
• MUSCLE/MUSCLE-3.8.1551-GCC-8.3.0
• NextGenMap/0.5.2
• NextGenMap/0.5.5-intel-2016b
• NSEG/1.0-GCCcore-6.4.0
• PEST++/4.2.14-intel-2018a
• PEST++/4.2.14-dev-intel-2018a
• picard/2.6.0-Java-11
• picard/2.9.0
• picard/2.22.3-Java-11
• Pilon/1.23-Java-11
• Pychopper/0.4.0-intel-2018a-Python-3.7.0
• Pysam/0.15.2-GCC-6.4.0-2.28
• Pysam/0.15.3-GCC-6.4.0-2.28
• QUAST / QUAST-LG
• Racon/1.4.7-GCCcore-6.4.0
• RECON/1.08-foss-2017b
• RepeatMasker/4.0.7-foss-2017b
• RepeatMasker/4.0.8-foss-2017b-Perl-5.28.0-HMMER
• RepeatModeler/1.0.11-foss-2017b
• RepeatScout/1.0.5-GCCcore-6.4.0
• REPET/2.5-foss-2017b-Python-2.7.14
• RSEM/1.3.1-intel-2018a
• Salmon/0.11.2-intel-2018a-Python-2.7.14
• Salmon/0.11.3-foss-2017b-Python-2.7.14
• SAMtools/1.3.1
• SAMtools/1.7
• SAMtools/1.8
• SAMtools/1.9-foss-2017b
• SAMtools/1.9-GCC-8.3.0
• SNAP/1.0beta.23-foss-2017b
• SNAP-HMM/2013-11-29-GCCcore-6.4.0
• SOAPdenovo2/r240
• Stacks/1.42
• Stacks/2.1-foss-2016b
• Stacks/2.1-intel-2018a
• Stacks/2.4-intel-2018a
• Stacks/2.4.1-foss/2017b
• STAR/2.5.4b-intel-2016b
• STAR/2.6.1 d-foss-2017b
• StringTie/1.3.5-GCCcore-6.4.0
• tabix/0.2.6
• TopHat/2.1.1
• Trimmomatic/0.36
• Trinity/2.2.0
• Trinity/2.4.0
• Trinity/2.6.6
• Trinity/2.8.4
• TOGA/1.0-intel-2019b-Python-3.7.4
• Unet/2019.02-intel-2018a-Python-3.6.3
• VCFTools/0.1.14
• VSEARCH/2.14.2-foss-2019b
• ViennaRNA/2.3.1

/cm/shared/uniol/modules/cfd

• ESMF/7.0.0
• ESMF/7.1.0r
• GMT/5.3.1
• OpenFOAM/1.7.1
• OpenFOAM/2.1.1
• OpenFOAM/2.3.1
• OpenFOAM/2.4.0
• OpenFOAM/3.0.1
• OpenFOAM/4.0
• OpenFOAM/4.1-gcc
• OpenFOAM/4.1-se
• OpenFOAM/4.1 (D)
• OpenFOAM-Extend/3.2
• OpenFOAM-Extend/4.0-gimkl-2018a
• OpenFOAM/2.4.0-gimkl-201
• OpenFOAM/2.4.0-gimkl-2018a
• OpenFOAM/5.0-gimkl-2018a
• OpenFOAM/6-gimkl-2018a
• OpenFOAM/7-gimkl-2018a
• OpenFOAM/-Plus/1906-gimkl-2018a
• PALMDependencies/all
• ThetaDependencies/all
• WPS/3.6.1
• WPS/3.7.1
• WPS/3.8.0
• WPS/3.8.1
• WPS/3.9 (D)
• WPSGeodata/3.8 (D)
• WPS/1.2.1-intel-2018a-solar
• WPS/4.0-intel-2018a-dmpar
• WPS/4.0.1-intel-2018a-dmpar
• WPS/4.0.2-intel-2018a-dmpar
• WRF/3.6.1
• WRF/3.7.1
• WRF/3.8.0
• WRF/3.8.1
• WRF/3.9 (D)
• WRF/1.2.4-intel-2018a-solar
• WRF/3.6.1-intel-2018a
• WRF/4.0-intel-2018a
• WRF/4.0.1-intel-2018a
• WRF/4.0.2-intel-2018a
• WRFGeodata/all
• WRFGeodata/3.8
• WRFGeodata/4.0

/cm/shared/uniol/modules/chem

• CP2K/3.0
• CP2K/5.1
• CP2K/7.1-intel-2019b
• gaussian/g09.b01
• gaussian/g09.d01
• gaussian/g16.a03
• Libint/2.4.2-gompi-2019b
• Libint/2.4.2-iimpi-2019b
• Libint/2.5.0-gompi-2019b
• Libint/2.5.0-iimpi-2019b
• Libint/2.6.0-gompi-2019b
• Libint/2.6.0-iimpi-2019b
• libxc/4.3.4-GCC-8.3.0
• libxc/4.3.4-gompi-2019b
• libxc/4.3.4-iccifort-2019b
• libxc/5.0.0.a-gompi-2019b
• MOLGW/2.A-foss-2019b
• MOLGW/2.D-intel-2019b
• NAMD/2.12
• NBO 2016/6.0
• ORCA/3.0.3
• ORCA/4.0.0
• ORCA/4.0.1.2
• pDynamo/1.9.0
• PLUMED/2.2.3
• QuantumESPRESSO /6.6-intel-2019b

/cm/shared/uniol/modules/compiler

• CUDA-Toolkit/8.0.44
• CUDA-Toolkit/recent
• GCC/4.9.4-2.25
• GCC/5.4.0-2.26
• GCC/6.2.0-2.27 (D)
• Go/1.11.5
• LLVM/3.8.1-goolf-5.2.01
• LLVM/3.8.1-intel-2016b
• LLVM/3.8.1-gimpi-6.2016
• LLVM/3.9.0-intel-2016b
• LLVM/5.0.0-foss-2017b
• LLVM/5.0.0-GCCcore-6.4.0
• LLVM/6.0.0-GCCcore-6.4.0
• LLVM/7.0.0-GCCcore-6.4.0 (D)
• LLVM/8.0.1-GCCcore-6.4.0
• NAG_Fortran/5.2
• PGI/12.10
• PGI/15.10
• PGI/16.10
• PGI/19.10-GCC-8.3.0
• icc/2016.3.210
• ifort/2016.3.210

/cm/shared/uniol/modules/data

• ANTs/2.2.0-foss-2017b-Python-2.7.14
• ANTs/2.2.0-foss-2017b-Python-3.6.3
• ANTs/2.2.0-foss-2017b-Python-3.7.0
• CDO/1.7.2-intel-2016b
• concaveman/1.0.0-intel-2018a-R-3.6.1
• dakota/6.10.0
• h5py/2.7.1-intel-2018a-Python-3.6.3
• h5py/2.8.0-foss-2017b-Python-3.6.3
• h5py/2.9.0-fosscuda-2019b-Python-3.7.4
• h5py/2.10.0-foss-2019b-Python-3.7.4
• h5py/2.10.0-fosscuda-2019b-Python-3.7.4
• HDF/4.2.11-intel-2016b
• HDF/4.2.12-gimkl-7.2017.3
• HDF/4.2.12-goolf-7.2.11
• HDF5/1.8.17-intel-2016b
• HDF5/1.10.1-foss-2017b
• HDF5/1.10.1-intel-2018a
• HDF5/1.10.2-gimkl-2018a
• HDF5/1.10.2-intel-2018a
• HDF5/1.10.5-intel-2018a
• HDF5/1.10.5-gompi-2019b
• HDF5/1.10.5-gompic-2019b
• HDF5/1.10.5-iimpi-2019b
• MariaDB/10.3.10-foss-2017b
• merra2wrf/2.0
• NCL/6.3.0-intel-2016b
• g2clib/1.4.0-intel-2016b
• g2lib/1.4.0-intel-2016b
• grib_api/1.16.0-intel-2016b
• ITK /4.13.1-foss-2017b-Python-2.7.14
• ITK /4.13.2-foss-2017b-Python-3.6.3
• ITK /4.13.2-foss-2017b-Python-3.7.0
• ITK /5.0.1-foss-2019b-Python-3.7.4
• netCDF/4.4.1-intel-2016b
• netCDF/4.4.1-intel-2016b-with-HDF4
• netCDF-Fortran/4.4.4-intel-2016b
• netCDF-Fortran/4.4.4-intel-2016b-with-HDF4
• netCDF/4.6.1-gimkl-2018a
• netCDF/4.6.1-intel-2018a
• netCDF4.7.1-gompi-2019b
• netCDF4.7.1-iimpi-2019b
• netCDF-Fortran/4.4.4-intel-2018a
• netCDF-Fortran4.5.2-gompi-2019b
• netCDF-Fortran/4.5.2-iimpi-2019b
• netCDF-C++/4.3.0-intel-2018a
• PyTables/3.5.1-foss-2017b-Python-2.7.14
• PyTables/3.5.1-foss-2017b-Python-3.6.3
• ROOT/v5.34.36
• ROOT/v6.08.02
• RStan/2.19.2-intel-2018a-R-3.6.1
• scikit-learn/0.23.2-intel-2019b-Python-3.7.4
• scikit-learn/0.23.2-fosscuda-2019b-Python-3.7.4

/cm/shared/uniol/modules/devel

• Advisor/2019.2
• ALE/0.6.0-GCCcore-6.4.0
• Autoconf/2.69-gimpi-6.2016
• Autoconf/2.69-gimpi-6.2016
• Automake/1.16.1-GCCcore-6.4.0
• Autotools/20150215
• Autotools/20150215-gimpi-6.2016
• Autotools/20170619-GCCcore-6.4.0
• Autotools/20180311-GCCcore-6.4.0
• ant/1.10.1-Java-1.8.0_172
• ant-1.10.7-Java-11
• Bazel/0.11.1-GCCcore-6.4.0
• Bazel/0.20.0-GCCcore-6.4.0
• Bazel/0.20.0-GCCcore-8.3.0
• Bazel/0.26.1-foss-2017b-Python-3.6.3
• Bazel/0.29.1-foss-2017b-Python-3.6.3
• Bazel/0.29.1-GCCcore-8.3.0
• Boost/1.61.0-gimpi-6.2016
• Boost/1.61.0-goolf-5.2.01
• Boost/1.61.0-intel-2016b
• Boost/1.63.0-intel-2018a
• Boost/1.64.0-intel-2017a
• Boost/1.65.1-foss-2017b-Python-3.6.3
• Boost/1.66.0-intel-2018a
• Boost/1.67.0-foss-2017b-Python-2.7.14
• Boost/1.71.0-iimpi-2018a
• Boost/1.71.0-intel-2018a-Python-2.7.14
• Boost/1.71.0-gompi-2019b
• Boost.Python/1.64.0-gompi-2019b
• Boost.Python/1.71.0-iimpi-2019b
• Boost.Python/1.71.0-gompi-2019b
• Boost.Python/1.72.0-gompi-2019b
• Boost.Python/1.72.0-iimpi-2019b
• catkin/0.7.14-foss-2017b-Python-2.7.14
• catkin-dep/1.0-foss-2017b-Python-2.7.14
• CMake/2.8.12
• CMake/3.6.2 (D)
• CMake/3.5.2-gimpi-6.2016
• CMake/3.6.1-gimpi-6.2016
• CMake/3.9.1-GCCcore-6.4.0
• CMake/3.9.5-GCCcore-6.4.0
• CMake/3.12.1-GCCcore-6.4.0
• CMake/3.13.3-GCCcore-6.4.0
• CMake/3.15.2-GCCcore-6.4.0
• CUDA-Profiler/8.0.44
• CUDA-Visual-Profiler/8.0.44
• Cube/4.3.4
• GObject-Introspection/1.52.0-intel-2016b
• gflags/2.2.2-GCCcore-6.4.0
• glog/0.4.0-GCCcore-6.4.0
• gtest/1.8.0-GCCcore-6.4.0
• intltool/0.51.0-foss-2017b-Perl-5.26.0
• intltool/0.51.0-GCCcore-6.4.0-Perl-5.26.0
• intltool/0.51.0-intel-2018a-Perl-5.26.0
• intltool/0.51.0-intel-2018a-Perl-5.28.0
• intltool/0.51.0-intel-2018a
• LevelDB/1.22-GCCcore-6.4.0
• libXmu/1.1.2-goolf-5.2.01
• libsigc++/2.10.2-GCCcore-8.3.0
• libsigc++/3.0.3-GCCcore-8.3.0
• LZO/2.10-foss-2017b
• M4/1.4.17
• M4/1.4.17-gimpi-6.2016
• Mako/1.0.4-gimpi-6.2016-Python-2.7.12
• Mako/1.0.7-foss-2017b-Python-3.6.3
• Mako/1.0.7-intel-2018a-Python-2.7.14
• Mako/1.0.8-intel-2018a-Python-2.7.14
• Mako/1.0.8-intel-2018a-Python-3.7.0
• Mako/1.1.0-GCCcore-8.3.0
• ncurses/6.0
• ncurses/6.0-gimpi-6.2016
• Nvidia-Tesla-GDK/352.79
• OTF2/2.0
• PCRE/8.40
• PCRE2/10.33-GCCcore-6.4.0
• protobuf-python/3.4.0-intel-2018a-Python-2.7.14
• protobuf-python/3.4.0-intel-2018a-Python-3.6.3
• protobuf/3.10.0-GCCcore-8.3.0
• protobuf/3.4.0-intel-2018a
• protobuf/3.7.1-GCCcore-6.4.0
• pkg-config/0.29.1-gimpi-6.2016
• pkgconfig/1.2.2-intel-2018a-Python-3.6.3
• pkgconfig/1.5.1-foss-2017b-Python-3.6.3
• pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4
• Qt/4.8.7-goolf-5.2.01
• Qt/4.8.7-intel-2016b
• Qt5/5.8.0-GCCcore-6.4.0
• Qt5/5.12.1-foss-2017b
• Qt5/5.13.1-GCCcore-6.4.0
• ROS/1.14.4-foss-2017b-Python-2.7.14
• PyTorch /1.0.1-foss-2017b-Python-3.6.3
• PyTorch /1.4.0-fosscuda-2019b-Python-3.7.4
• PyTorch /1.6.0-fosscuda-2019b-Python-3.7.4
• SCons/3.0.5-intel-2018a-Python-3.6.3
• sparsehash/2.0.3-GCCcore-6.4.0
• sparsehash/2.0.3-GCCcore-8.3.0
• SQLite/3.9.2-intel-2016b
• SQLite/3.13.0-goolf-5.2.01
• SQLite/3.13.0-intel-2016b
• SQLite/3.19.3
• SQLite/3.20.1-GCCcore-6.4.0
• SQLite/3.23.0-intel-2018a
• SQLite/3.28.0-GCCcore-6.4.0
• Spark/2.4.0-intel-2018a-Hadoop-2.7
• SWIG/3.0.8-intel-2016b-Python-2.7.12
• SWIG/3.0.12-Python-3.6.1
• SWIG/4.0.1-GCCcore-8.3.0
• Scalasca/2.3
• Valgrind/3.12.0
• xbitmaps/1.1.1
• xcb-proto/1.7-goolf-5.2.01-Python-2.7.3
• xextproto/7.2.1-goolf-5.2.01
• xproto/7.0.23-goolf-5.2.01
• xtrans/1.2-goolf-5.2.01
• xorg-macros/1.19.0

/cm/shared/uniol/modules/lang

• Anaconda3/4.3.0
• Anaconda3/5.1.0
• Anaconda3/5.3.0
• Anaconda3/2019.10
• Bison/3.0.4
• Bison/3.3.2
• Bison/3.5.3
• Bison/3.0.4-gimpi-6.2016
• Bison/3.3.2-GCCcore-8.3.0
• Bison/3.6.1-GCCcore-8.3.0
• Gurobi/7.0.2
• flex/2.6.0-gimpi-6.2016
• flex/2.6.4-GCCcore-6.4.0
• Java/8.112
• Java/1.8
• Java-1.8.0_231
• Java/1.8.0_172
• Java/1.8.0_192
• Java/11.0.2
• Julia/1.0.1-intel-2018a-Perl-5.28.0
• nodejs/4.4.7-intel-2016b
• nodejs/10.15.3-GCCcore-6.4.0
• Perl/5.20.3
• Perl/5.26.0-foss-2017b
• Perl/5.26.0-GCCcore-6.4.0
• Perl/5.28.0-GCCcore-6.4.0
• Python/2.7.3-goolf-5.2.01
• Python/2.7.11-intel-2016b
• Python/2.7.12
• Python/2.7.14-intel-2018a
• Python/2.7.14-foss-2017b
• Python/3.5.2 (D)
• Python/3.6.1-goolf-5.2.01
• Python/3.6.3-foss-2017b
• Python3.6.3-intel-2018a
• Python/3.7.0-foss-2017b
• Python/3.7.0-intel-2018a
• R/3.3.1
• R/3.4.3
• R/3.5.2
• R/3.6.1
• R/4.0.2-foss-2019b
• RStudio/1.2.5019-intel-2018a
• ScientificPython/2.9.4-Python-2.7.12 (D)
• SciPy-bundle/2019.10-foss-2019b-Python-2.7.16
• SciPy-bundle/2019.10-foss-2019b-Python-3.7.4
• SciPy-bundle/2019.10-fosscuda-2019b-Python-3.7.4
• SciPy-bundle/2019.10-intel-2019b-Python-3.7.4
• TCL/8.6.4-intel-2016b
• TCL/8.6.5
• TCL/Tcl/8.6.7-GCCcore-6.4.0
• TCL/Tcl/8.6.8-GCCcore-6.4.0
• Tkinter/2.7.14-foss-2017b-Python-2.7.14
• Tkinter/2.7.14-intel-2018a-Python-2.7.14
• Tkinter/3.6.3-intel-2018a-Python-3.6.3
• Tkinter/3.7.4-GCCcore-8.3.0
• Yasm/1.3.0

/cm/shared/uniol/modules/lib

• Blosc/1.14.4-GCCcore-6.4.0
• CFITSIO/3.410
• CUDA-Blas/8.0.44
• CUDA-FFT/8.0.44
• double-conversion/3.1.4-GCCcore-6.4.0
• FTGL/2.1.3-rc5-GCCcore-8.3.0
• GlobalArrays/5.4b-intel-2016b
• ICU/61.1-GCCcore-6.4.0
• ICU/64.2-GCCcore-6.4.0
• jemalloc/5.1.0-GCCcore-6.4.0
• lemon/1.2.1-GCCcore-6.4.0
• libevent/2.1.8-GCCcore-6.4.0
• libdrm/2.4.70-gimpi-6.2016
• libdrm/2.4.100-GCCcore-8.3.0
• libffi/3.2.1-gimpi-6.2016
• libglade/2.6.4-intel-2016b
• libglvnd/1.2.0-GCCcore-8.3.0
• libgpuarray/0.7.6-fosscuda-2019b-Python-3.7.4
• libharu/2.3.0-intel-2016b
• libjpeg-turbo/1.5.2-GCCcore-6.4.0
• libjpeg-turbo/2.0.2-GCCcore-6.4.0
• libLBFGS/1.10-GCCcore-8.3.0
• libtool/2.4.6
• libtool/2.4.6-gimpi-6.2016
• libpng/1.6.24
• libpng/1.6.24-gimpi-6.2016
• libreadline/6.3-gimpi-6.2016
• libreadline/6.2-goolf-5.2.01
• libreadline/7.0-GCCcore-6.4.0
• libreadline/8.0-GCCcore-6.4.0
• LibTIFF/4.0.10-GCCcore-8.3.0
• libunwind/1.2.1-GCCcore-6.4.0
• libxcb/1.8-goolf-5.2.01-Python-2.7.3
• libXft/2.3.2-intel-2016b
• libxml2/2.9.4
• libxml2/2.9.4-gimpi-6.2016
• libxml2/2.9.9-GCCcore-8.3.0
• libxml++/2.40.1-GCCcore-8.3.0
• libXpm/3.5.11-goolf-5.2.01
• libXpm/3.5.11-intel-2016b
• libyaml/0.1.7-GCCcore-6.4.0
• libyaml/0.2.2-GCCcore-6.4.0
• lz4/1.9.2-GCCcore-8.3.0
• FLANN/1.9.1-foss-2019b-Python-3.7.4
• mysqlclient/1.4.2-foss-2017b-Python-2.7.14
• NCCL/2.4.8-gcccuda-2019b
• nettle/3.2-gimpi-6.2016
• nettle/3.3-GCCcore-6.4.0
• nettle/3.4.1-GCCcore-6.4.0
• NIfTI/2.0.0-GCCcore-8.3.0
• NSPR/4.9-GCCcore-6.4.0
• NSPR/4.20-GCCcore-6.4.0
• NSPR/4.23-GCCcore-6.4.0
• pybind11/2.4.3-GCCcore-8.3.0-Python-3.7.4
• path.py/8.2.1-intel-2016b-Python-3.5.2
• PROJ/6.2.1-GCCcore-8.3.0
• pyYAML//3.12-intel-2018a-Python-3.6.3
• PyYAML/3.13-foss-2017b-Python-3.6.3
• PyYAML/5.1-foss-2017b-Python-2.7.14
• SDL2/2.0.8-GCCcore-6.4.0
• SDL2/2.0.8-intel-2018a
• snappy/1.1.7-intel-2018a
• SIONlib/1.6.1
• tbb/2018_U3-GCCcore-6.4.0
• tbb/2019.4.199
• tbb/2020.2-GCCcore-8.3.0
• testpath/0.3-intel-2016b-Python-3.5.2
• TensorFlow/1.7.0-intel-2018a-Python-3.6.3
• TensorFlow/1.8.0-intel-2018a-Python-3.6.3
• TensorFlow/1.13.1-foss-2017b-Python-3.6.3
• TensorFlow/2.3.1-fosscuda-2019b-Python-3.7.4
• TensorFlow/2.1.0-fosscuda-2019b-Python-3.7.4
• TensorFlow/1.13.1-fosscuda-2019b-Python-3.7.4
• Xerces-C++/3.1.3
• xforms/1.2.4
• zlib/1.2.7-goolf-5.2.01
• zlib/1.2.8
• zlib/1.2.8-gimpi-6.2016
• zlib/1.2.11
• zlib/1.2.11-GCCcore-6.4.0
• zoltan/3.83
• zstd/1.4.4-GCCcore-8.3.0
• zstd/1.4.5-GCCcore-8.3.0

/cm/shared/uniol/modules/math

• biomod2/3.4.6-foss-2019b-R-4.0.2
• Eigen/3.2.9-gimpi-6.2016
• Eigen/3.3.7
• bgc/1.03-intel-2018a
• GMP/6.1.0-intel-2016b
• GMP/6.1.1
• Keras /2.1.5-intel-2018a-Python-3.6.3
• Keras /2.2.4-foss-2017b-Python-3.6.3
• Keras /2.2.4-fosscuda-2019b-Python-3.7.4
• Keras /2.4.3-fosscuda-2019b-Python-3.7.4
• MPFR/3.1.4
• MPFR/4.0.2-GCCcore-8.3.0
• METIS/5.1.0-gimpi-6.2016 (D)
• NEURON/7.5-intel-2016b
• NEURON/7.6.2-intel-2018a
• numexpr/2.6.5-foss-2017b-Python-3.6.3
• ParMETIS/4.0.3-foss-2019b
• ParMETIS/4.0.3-iimpi-2019b
• quanteda/2.1.0-foss-2019b-R-4.0.2
• SCOTCH/6.0.4-gimpi-6.2016 (D)
• Theano/1.0.1-foss-2017b-Python-3.6.3
• Theano/1.0.4-fosscuda-2019b-Python-3.7.4

/cm/shared/uniol/modules/mpi

• OpenMPI/1.10.4-GCC-4.9.4
• OpenMPI/2.0.1-GCC-5.4.0
• OpenMPI/2.0.1-GCC-6.2.0
• OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
• OpenMPI/3.1.4-gcccuda-2019b
• impi/5.1.3.210

/cm/shared/uniol/modules/numlib

• ATLAS/3.10.2
• Armadillo/7.500.1
• CGAL/4.8.1-gimpi-6.2016
• CGAL/4.14.1-foss-2019b-Python-3.7.4
• CLHEP/2.1.3.1
• CLHEP/2.2.0.4
• CLHEP/2.3.1.1
• CLHEP/2.3.4.3
• cuDNN/5.1-CUDA-8.0.44
• cuDNN/7.6.4.38-gcccuda-2019b
• cvx/2.1
• Eigen/3.2.9
• FFTW/3.3.5-gompi-5.2.01
• FFTW-3.3.8-gompic-2019b
• FFTW/3.3.8-gompi-2019b
• FIAT/1.6.0-intel-2016b-Python-2.7.12
• GMP/6.1.1 (D)
• GSL/2.1-intel-2016b
• GSL/2.3-goolf-6.2.01
• GSL/2.3-intel-2016b
• GSL/2.4-GCCcore-6.4.0
• GSL/2.4-goolf-7.2.11
• Hypre/2.11.1
• imkl/11.3.3.210
• leda/6.3
• LinBox/1.4.0
• maple/18
• maple/2016 (D)
• MATLAB/2016b
• MATLAB/2017b
• MATLAB/2018b
• MATLAB/2019b
• MPFR/3.1.4
• NLopt/2.4.2-foss-2017b
• NLopt/2.4.2-intel-2018a
• NLopt/2.6.1-GCCcore-6.4.0
• NTL/9.8.1
• Octave/4.0.3
• OpenBLAS/0.2.19
• OpenBLAS/0.2.20-GCC-6.4.0-2.28
• Qhull/2015.2
• ScaLAPACK/2.0.2
• ScaLAPACK/2.0.2-gompi-2019b
• ScaLAPACK/2.0.2-gompic-2019b
• SuiteSparse/4.5.3
• SuiteSparse/4.5.3-intel-2018a-METIS-5.1.0
• SuiteSparse/5.2.0-intel-2016b-METIS-5.1.0
• SuiteSparse/5.2.0-intel-2018a-METIS-5.1.0
• stata/13

/cm/shared/uniol/modules/phys

• EGSnrc/2017
• EGSnrc/2018
• EGSnrc/2019
• FDTD Solutions/8.20.1634
• FDTD Solutions/8.20.1731
• FDTD Solutions/8.21.1933
• fluka/2011.2c
• Geant4/9.6.p04
• Geant4/10.01.p01
• Geant4/10.01.p03
• Geant4/10.02.p01
• Geant4/10.03.p01
• Geant4/10.4.1-intel-2018a-noMT
• Geant4/10.4.1-intel-2018a
• Geant4/10.5.0-foss-2017b-noMT
  • g4py/10.05
• Lumerical/2019b-r3
• Lumerical/2020a-r6
• Lumerical/2020-R2.1-2408
• Octopus/9.2-foss-2019b
• PVMOS/0.48
• SCUFF-EM/0.96-intel-2018a

/cm/shared/uniol/modules/6.4/system

• CUDA-Toolkit/8.0.61
• CUDA-Toolkit/9.0.176
• CUDA-Toolkit/9.1.85
• CUDA/9.0.176
• CUDA/9.1.85
• CUDA-10.1.243-GCC-8.3.0
• file/5.33-GCCcore-6.4.0
• hwloc/1.11.8-GCCcore-6.4.0
• OpenSSL/1.0.2t-GCCcore-6.4.0
• OpenSSL/1.1.0h-GCCcore-6.4.0

/cm/shared/uniol/modules/toolchain

• foss/2016b
• foss/2019b
• fosscuda/2019b
• gcccuda/2019b
• gimpi/6.2016
• gompi/4.1.10
• gompi/5.2.01
• gompi/6.2.01 (D)
• gompic/2019b
• goolf/4.1.10
• goolf/5.2.01
• goolf/6.2.01
• iimpi/2013b
• iimpi/2016b (D)
• intel/2013b
• intel/2016b (D)

/cm/shared/uniol/modules/tools

• ansys/18.0
• bzip2/1.0.6-gimpi-6.2016
• configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
• EasyBuild/3.0.0
• EasyBuild/3.6.1
• EasyBuild/3.8.1
• EasyBuild/3.9.0
• EasyBuild/3.9.2
• EasyBuild/3.9.3
• EasyBuild/4.1.2
• expat/2.2.0-gimpi-6.2016
• expat/2.2.7-GCCcore-8.3.0
• Ghostscript/9.19-intel-2016b
• Ghostscript/9.27-GCCcore-6.4.0
• gzip/1.10-GCCcore-8.3.0
• IOzone/3.490-foss-2019b
• IPython/6.5.0-foss-2019b-Python-3.7.4
• IPython/7.13.0-foss-2019b-Python-3.7.4
• git/2.23.0-GCCcore-8.3.0-nodocs
• Inspector/2019.1
• Meson/0.50.0-intel-2018a-Python-3.7.0
• Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4
• Meson/0.55.1-GCCcore-8.3.0-Python-3.7.4
• Nextflow/20.10.0
• Ninja/1.9.0-foss-2017b
• Ninja/1.9.0-GCCcore-8.3.0
• Ninja/1.10.0-GCCcore-8.3.0
• NCO/4.6.0-intel-2016b
• OSU-Micro-Benchmarks/5.6.2-gompi-2017b
• parallel/20160622-GCC-5.4.0-2.26
• parallel/20180422-intel-2018a
• parallel/20190222-GCCcore-6.4.
• patchelf/0.9-GCCcore-6.4.0
• re2c/1.1.1-GCCcore-6.4.0
• tree/1.7.0
• tmux/3.0-rc5-GCCcore-6.4.0
• Singularity/2.5.2-GCCcore-6.4.0
• Singularity/2.6.1-GCCcore-6.4.0
• util-linux/2.29-intel-2016b
• VTune/2019.1
• wheel/0.30.0-intel-2018a-Python-3.6.3
• wheel/0.31.1-foss-2017b-Python-3.6.3
• XZ/5.2.2-gimpi-6.2016
• XZ/5.2.2-intel-2016b

/cm/shared/uniol/modules/vis

• at-spi2-core/2.34.0-GCCcore-8.3.0
• at-spi2-atk/2.34.1-GCCcore-8.3.0
• ATK/2.24.0-intel-2016b
• ATK/2.34.1-GCCcore-8.3.0
• cairo/1.14.8-GCCcore-6.4.0
• cairo/1.16.0-GCCcore-6.4.0
• cairo/1.16.0-GCCcore-8.3.0
• cairo/1.17.2-GCCcore-8.3.0-snapshot
• cairomm/1.10.0-GCC-6.4.0-2.28
• cairomm/1.12.2-GCCcore-8.3.0
• cairomm/1.15.5-GCCcore-8.3.0
• FFmpeg/3.1.3-intel-2016b
• FFmpeg/4.2.1-GCCcore-8.3.0
• fiji/2.1.2
• fontconfig/2.12.1-gimpi-6.2016
• fontconfig/2.13.1-GCCcore-8.3.0
• fontconfig/2.13.92-GCCcore-8.3.0
• freetype/2.7.1
• freetype/2.6.5-gimpi-6.2016
• freetype/2.8.1-GCCcore-6.4.0
• freetype/2.9.1-GCCcore-6.4.0
• gettext/0.18.2-goolf-5.2.01
• gettext/0.19.8-gimpi-6.2016
• Gdk-Pixbuf/2.38.2-GCCcore-8.3.0
• Glade/3.8.5-intel-2016b-Python-2.7.12
• GLib/2.49.5
• GLib/2.52.0-intel-2016b
• GLib/2.54.2-GCCcore-6.4.0
• GLib/2.60.1-GCCcore-6.4.0
• GraphicsMagick/1.3.25-intel-2016b
• GTK+/2.24.3-intel-2016b
• GTK+/3.24.13-GCCcore-8.3.0
• gv/3.7.4
• ImageMagic/7.0.8-46-GCCcore-6.4.0
• ImageMagic/7.0.9-5-GCCcore-8.3.0
• inputproto/2.3-goolf-5.2.01
• kbproto/1.0.6-goolf-5.2.01
• matplotlib/2.1.2-intel-2018a-Python-2.7.14
• matplotlib/2.1.2-intel-2018a-Python-3.6.3
• matplotlib/2.2.4-foss-2017b-Python-2.7.14
• matplotlib/3.0.3-intel-2018a-Python-3.6.3
• matplotlib/3.0.3-foss-2017b-Python-3.6.3
• matplotlib/3.1.1-foss-2019b-Python-3.7.4
• matplotlib/3.3.3-fosscuda-2019b-Python-3.7.4
• Mesa/17.2.5-foss-2017b
• Mesa/17.2.5-GCCcore-6.4.0
• Mesa/17.3.6-intel-2018a
• Mesa/18.1.1-GCCcore-6.4.0
• Mesa/19.0.1-GCCcore-6.4.0
• Mesa/19.1.4-GCCcore-6.4.0
• Mesa/20.0.2-GCCcore-8.3.0
• OpenCV/3.1.0-intel-2016b
• OpenCV/3.3.0-foss-2017b-Python-3.6.3
• OpenCV/4.2.0-fosscuda-2019b-Python-3.7.4
• OpenCV/4.4.0-fosscuda-2019b-Python-3.7.4
• p4vasp/0.3.29-intel-2016b-Python-2.7.12
• ParaView/5.1.2-goolf-5.2.01-mpi
• ParaView/5.1.2-intel-2016b-mpi (D)
• Tk/8.6.4-intel-2016b-no-X11
• Tk/8.6.5-gimpi-6.2016
• Tk/8.6.8-GCCcore-6.4.0
• torchvision/0.5.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.4.0
• torchvision/0.7.0-fosscuda-2019b-Python-3.7.4-PyTorch-1.6.0
• UDUNITS/2.2.20-intel-2016b
• gettext/0.19.8
• gnuplot/5.0.5-intel-2016b
• gnuplot/5.2.2-foss-2017b
• gnuplot/5.2.6-foss-2017b
• grace/5.1.25
• libICE/1.0.8-goolf-5.2.01
• libSM/1.2.1-goolf-5.2.01
• libX11/1.6.1-goolf-5.2.01
• libX11/1.6.3-intel-2016b
• libXaw/1.0.12-goolf-5.2.01
• libXpm/3.5.11-goolf-5.2.01
• libXt/1.1.4-goolf-5.2.01
• LittleCMS/2.9-GCCcore-6.4.0
• motif/2.3.6
• ncview/2.1.7-intel-2016b
• pixman/0.38.4-GCCcore-8.3.0
• Pillow-SIMD/6.0.x.post0-GCCcore-8.3.0
• PyCairo/1.10.0-intel-2016b-Python-2.7.12
• PyCairo/1.18.2-GCCcore-8.3.0
• PyCairo/1.19.1-GCCcore-8.3.0-Python-3.7.4
• PyGObject/2.28.6-intel-2016b-Python-2.7.12
• PyGTK/2.24.0-intel-2016b-Python-2.7.12
• PyOpenGL/3.1.1a1-intel-2016b
• VTK/8.1.0-intel-2018a-Python-2.7.14
• VTK/8.1.1-foss-2017b-Python-2.7.14
• VTK/8.2.0-foss-2019b-Python-3.7.4
• VTK/9.0.1-fosscuda-2019b-Python-3.7.4
• VTK/9.0.1-fosscuda-2019b_master (more recent than 9.0.1 & bug-fixed)
• X11/20160819-goolf-5.2.01
• X11/20171023-GCCcore-6.4.0
• X11/20180604-GCCcore-6.4.0
• X11/20190311-GCCcore-6.4.0
• X11/20200222-GCCcore-8.3.0
• X11/all

The list above is based on the information gathered by the command

module avail

If you want to create a list of every available software on the cluster, on your own, you can do this by simply using the command:

module spider

The available software will be listed in the format: name, version