Difference between revisions of "Welcome to the HPC User Wiki of the University of Oldenburg"
From HPC users
Jump to navigationJump to search
Albensoeder (talk | contribs) |
|||
(55 intermediate revisions by 6 users not shown) | |||
Line 5: | Line 5: | ||
{| style="text-align:justify;font-size:1.2em;line-height:1.2em;background-color:#eeeeff;" border="1" cellspacing="0" | {| style="text-align:justify;font-size:1.2em;line-height:1.2em;background-color:#eeeeff;" border="1" cellspacing="0" | ||
|- | |- | ||
| [[Image:picture_of_nodes.jpg|155px]] | |||
| [[Image:picture_of_cluster_closed.jpg|70px]] | | [[Image:picture_of_cluster_closed.jpg|70px]] | ||
| ''This is the HPC-Wiki of the University of Oldenburg''<br> | | ''This is the HPC-Wiki of the University of Oldenburg''<br> | ||
| [[Image:picture_of_gpfs.jpg| | | [[Image:picture_of_gpfs.jpg|82px]] | ||
| [[Image:picture_of_infinyband.jpg|155px]] | |||
|} | |} | ||
</center> | </center> | ||
= Basic | = Basic Information = | ||
<center> | <center> | ||
{| style="background-color:#eeeeff;" cellpadding="10" border="1" cellspacing="0" | {| style="background-color:#eeeeff;" cellpadding="10" border="1" cellspacing="0" | ||
Line 21: | Line 23: | ||
! Job Management (Queueing) System | ! Job Management (Queueing) System | ||
! Altix UV 100 system | ! Altix UV 100 system | ||
! Examples | |||
|- valign="top" | |- valign="top" | ||
| | | | ||
Line 27: | Line 30: | ||
* [[HPC Facilities of the University of Oldenburg#HERO| HERO]] | * [[HPC Facilities of the University of Oldenburg#HERO| HERO]] | ||
* [[HPC Policies| HPC Policies]] | * [[HPC Policies| HPC Policies]] | ||
* [[Unix groups| Groups ]] | |||
* [[Acknowledging_the_HPC_facilities| Acknowledging FLOW/HERO]] | |||
* [[User Meetings]] | |||
| | | | ||
* [[Logging in to the system#From within the University (intranet) | From University]] | * [[Logging in to the system#From within the University (intranet) | From University]] | ||
Line 32: | Line 38: | ||
| | | | ||
* [[User environment - The usage of module| Usage of module]] | * [[User environment - The usage of module| Usage of module]] | ||
* [[File system| | * [[File system| File System / Quotas]] | ||
* [[Mounting Directories of FLOW and HERO#Windows | Shares under Windows]] | * [[Mounting Directories of FLOW and HERO#Windows | Shares under Windows]] | ||
* [[Mounting Directories of FLOW and HERO#Linux | Shares under Linux]] | * [[Mounting Directories of FLOW and HERO#Linux | Shares under Linux]] | ||
Line 53: | Line 59: | ||
* [[SGE Job Management (Queueing) System#Array jobs| Job arrays ]] | * [[SGE Job Management (Queueing) System#Array jobs| Job arrays ]] | ||
* [[SGE Job Management (Queueing) System#Environment variables | Environment variables]] | * [[SGE Job Management (Queueing) System#Environment variables | Environment variables]] | ||
* [[Brief_Introduction_to_HPC_Computing#Checking_the_status_of_the_job | Checking the job status]] [[Brief_Introduction_to_HPC_Computing#Checking_the_status_of_the_job_2| (par. jobs)]] | |||
* [[Brief_Introduction_to_HPC_Computing#Details_for_finished_jobs| Obtaining details for finished jobs]] | |||
* [[SGE Job Management (Queueing) System#Documentation | Documentation]] | * [[SGE Job Management (Queueing) System#Documentation | Documentation]] | ||
* [[Queues_and_resource_allocation| On Queues and resource allocation]] | |||
| | | | ||
* [[Using the Altix UV 100 system#Compiling and linking applications| Compiling]] | * [[Using the Altix UV 100 system#Compiling and linking applications| Compiling]] | ||
* [[Using the Altix UV 100 system#Submitting SGE jobs| Submitting]] | * [[Using the Altix UV 100 system#Submitting SGE jobs| Submitting]] | ||
* [[Using the Altix UV 100 system#Documentation| Documentation]] | * [[Using the Altix UV 100 system#Documentation| Documentation]] | ||
| | |||
* [[Brief Introduction to HPC Computing| Brief Introduction to HPC Computing]] | |||
* [[Matlab Examples using MDCS| Matlab examples using MDCS]] | |||
* [[MDCS Basic Example]] (for R2014b and later) | |||
* [[HPC Tutorial No1| HPC Tutorial 2013]] | |||
* [[HPC Introduction October 6-8, 2014| HPC Tutorial 2014]] | |||
* [[HPC Introduction October 7-9, 2015| HPC Tutorial 2015]] | |||
|- | |- | ||
|} | |} | ||
</center> | </center> | ||
= Application Software and Libraries = | = Application Software and Libraries = | ||
Line 72: | Line 88: | ||
!Quantum Chemistry | !Quantum Chemistry | ||
!Computational Fluid Dynamics | !Computational Fluid Dynamics | ||
!Mathematics | !Mathematics/Scripting | ||
!Visualisation | !Visualisation | ||
!Libraries | !Libraries | ||
|- valign="top" | |- valign="top" | ||
| | | | ||
* [[debugging]] | |||
* [[git]] | |||
* [[GNU Compiler]] | * [[GNU Compiler]] | ||
* [[Intel Compiler]] | * [[Intel Compiler]] | ||
* [[Open64 Compiler]] | |||
* [[PGI Compiler]] | * [[PGI Compiler]] | ||
* [[ | * [[Profiling_using_gprof| profiling]] | ||
* [[scalasca]] | * [[scalasca]] | ||
* [[subversion (svn)]] | * [[subversion (svn)]] | ||
* [[valgrind]] | * [[valgrind]] | ||
| | | | ||
* [[Gaussian 09]] | * [[Gaussian 09]] | ||
* [[MOLCAS]] | * [[MOLCAS]] | ||
* [[MOLPRO]] | * [[MOLPRO]] | ||
* [[NBO]] | |||
* [[ORCA]] | |||
| | | | ||
* [[Ansys]] | |||
* [[FOAMpro]] | |||
* [[Nektar++]] | |||
* [[Nek 5000]] | |||
* [[OpenFOAM]] | |||
* [[PALM]] | * [[PALM]] | ||
* [[STAR-CCM++]] | * [[STAR-CCM++]] | ||
* [[THETA]] | |||
* [[WRF/WPS]] | * [[WRF/WPS]] | ||
| | | | ||
* [[Configuration MDCS]] (2014b and later) | |||
* [[MATLAB Distributing Computing Server]] | * [[MATLAB Distributing Computing Server]] | ||
* [[Python]] | |||
* [[R]] | * [[R]] | ||
* [[STATA| STATA]] | |||
| | | | ||
* [[iso99]] | |||
* [[NCL]] | |||
* [[ncview]] | * [[ncview]] | ||
* [[paraview]] | * [[paraview]] | ||
| | | | ||
* [[BLAS and LAPACK]] | * [[BLAS and LAPACK]] | ||
* [[EGSnrc]] | |||
* [[FLUKA]] | |||
* [[GEANT4]] | |||
* [[Gurobi]] | |||
* [[HDF5]] | * [[HDF5]] | ||
* [[Intel MPI]] | |||
* [[LEDA]] | |||
* [[NetCDF]] | * [[NetCDF]] | ||
* [[ | * [[OpenMPI]] | ||
* [[ | |||
|- | |||
|} | |||
</center> | |||
= Courses and Tutorials = | |||
<center> | |||
{| style="background-color:#eeeeff;" cellpadding="10" border="1" cellspacing="0" | |||
|- style="background-color:#ddddff;" | |||
!Introduction to HPC Courses | |||
!Matlab Tutorials | |||
!New OS | |||
|- valign="top" | |||
| | |||
* [[HPC Introduction October 6-8, 2014]] | |||
* [[HPC Introduction October 7-9, 2015]] | |||
| | |||
* [[Audio Data Processing]] | |||
* [[Using the MEX Compiler]] | |||
| | |||
* [[media:New_OS_On_FLOW.pdf | New OS on FLOW ]] | |||
|- | |- | ||
Line 118: | Line 172: | ||
'''''Note:''' This Wiki is under construction and a preliminary version! Contributions are welcome. Please ask Stefan | = Contact = | ||
<center> | |||
{| style="background-color:#eeeeff;" cellpadding="10" border="1" cellspacing="0" | |||
|- style="background-color:#ddddff;" | |||
!HPC Resource | |||
!EMail | |||
|- valign="top" | |||
| | |||
FLOW and HERO<br> | |||
Both (in case of vacation)<br> | |||
| | |||
Stefan.Harfst@uni-oldenburg.de<br> | |||
hpcuniol@uni-oldenburg.de<br> | |||
|- | |||
|} | |||
</center> | |||
'''''Note:''' This Wiki is under construction and a preliminary version! Contributions are welcome. Please ask Stefan Harfst (Stefan.Harfst(at)uni-oldenburg.de) for further informations.'' | |||
<center> | <center> | ||
Line 125: | Line 198: | ||
</div> | </div> | ||
[[HPC User Wiki 2016]] |
Latest revision as of 15:08, 6 June 2017
![]() |
![]() |
This is the HPC-Wiki of the University of Oldenburg |
![]() |
![]() |
Basic Information
HPC Facilities | Login | User environment | Compiling and linking | Job Management (Queueing) System | Altix UV 100 system | Examples |
---|---|---|---|---|---|---|
Application Software and Libraries
Compiler and Development Tools | Quantum Chemistry | Computational Fluid Dynamics | Mathematics/Scripting | Visualisation | Libraries |
---|---|---|---|---|---|
|
Courses and Tutorials
Introduction to HPC Courses | Matlab Tutorials | New OS |
---|---|---|
Contact
HPC Resource | |
---|---|
FLOW and HERO |
Stefan.Harfst@uni-oldenburg.de |
Note: This Wiki is under construction and a preliminary version! Contributions are welcome. Please ask Stefan Harfst (Stefan.Harfst(at)uni-oldenburg.de) for further informations.
Only for editors: Formatting rules for this Wiki