Difference between revisions of "Installed Application Software and Libraries"

Revision as of 14:30, 17 October 2017

Introduction

This page was created to give you an overview of the installed software on the cluster (name/version). The list will be updated at least once per week.

If you find a program in this list, but cant find it on the cluster (for example when looking at the output of the command module avail) it has most likely been hidden. Its also possible that a module isnt listed here because it is hidden. You can find every hidden module here: /cm/shared/uniol/modules/.hidden. If you want to access a hidden module, you have to add a "." in front of the version number, e.g.:

[abcd1234@hpcl001 ~]$ module load PCRE/8.39-intel-2016b
Lmod has detected the following error:  The following module(s) are unknown: "PCRE/8.39-intel-2016b"

Please check the spelling or version number. Also try "module spider ..."

[abcd1234@hpcl001 ~]$ module load PCRE/.8.39-intel-2016b
[abcd1234@hpcl001 ~]$ ml 

Currently Loaded Modules:
 1) hpc-uniol-env   3) icc/2016.3.210   5) binutils/.2.26-GCCcore-5.4.0   7) impi/5.1.3.210   9) imkl/11.3.3.210  11) PCRE/.8.39-intel-2016b
 2) slurm/current   4) GCCcore/.5.4.0   6) ifort/2016.3.210               8) iimpi/2016b     10) intel/2016b

/cm/local/modulefiles

cluster-tools/7.3
cmd
dot
freeipmi/1.5.2
gcc/6.1.0
ipmitool/1.8.17
module-git
module-info
openldap
shared

/cm/shared/uniol/modules/core

hpc-uniol-env (L)
slurm/current (L)

/cm/shared/uniol/modules/bio

BCFtools/1.3.1
bcl2fastq2/2.18.0.12
bcl2fastq2/2.19.0
BEDTools/2.26.0
BLAST/2.2.26
BLAST/2.6.0 (D)
BLAT/3.5
BamTools/2.4.0
Beast/2.4.5
BioPerl/1.7.0
Biopython/1.68
Bowtie/1.1.2
Bowtie2/2.2.9
bwa.kit/0.7.12
CD-HIT/4.6.4
cutadapt/1.9.1
GATK/3.7-Java-8.112
GROMACS/5.1.4-intel-2016b-mt
FASTX-Toolkit/0.0.14
FastQC/0.11.5
IGV/2.3.80
IGVTools/2.3.75
Lighter/1.0
Lumpy/0.1
NextGenMap/0.5.2
Picard/2.9.0
SAMtools/1.3.1
SAMtools/0.1.16
SOAPdenovo2/r240
Stacks/1.42
TopHat/2.1.1
Trimmomatic/0.36
Trinity/2.2.0
Trinity/2.4.0
VCFTools/0.1.14
ViennaRNA/2.3.1

/cm/shared/uniol/modules/cfd

ESMF/7.0.0
GMT/5.3.1
OpenFOAM/1.7.1
OpenFOAM/2.1.1
OpenFOAM/2.3.1
OpenFOAM/2.4.0
OpenFOAM/3.0.1
OpenFOAM/4.0
OpenFOAM/4.1-gcc
OpenFOAM/4.1-se
OpenFOAM/4.1 (D)
OpenFOAM-Extend/3.2
PALMDependencies/all
ThetaDependencies/all
WPS/3.6.1
WPS/3.7.1
WPS/3.8.0
WPS/3.8.1
WPS/3.9 (D)
WPSGeodata/3.8 (D)
WRF/3.6.1
WRF/3.7.1
WRF/3.8.0
WRF/3.8.1
WRF/3.9 (D)
WRFGeodata/all

/cm/shared/uniol/modules/chem

CP2K/3.0
gaussian/g09.b01
gaussian/g09.d01 (D)
NAMD/2.12
NBO 2016/6.0
ORCA/3.0.3
ORCA/4.0.0 (D)
pDynamo/1.9.0
PLUMED/2.2.3

/cm/shared/uniol/modules/compiler

CUDA-Toolkit/8.0.44
CUDA-Toolkit/recent
GCC/4.9.4-2.25
GCC/5.4.0-2.26
GCC/6.2.0-2.27 (D)
LLVM/3.8.1-goolf-5.2.01
LLVM/3.8.1-intel-2016b
LLVM/3.8.1-gimpi-6.2016
LLVM/3.9.0-intel-2016b (D)
NAG_Fortran/5.2
PGI/12.10
PGI/15.10
PGI/16.10 (D)
icc/2016.3.210
ifort/2016.3.210

/cm/shared/uniol/modules/data

CDO/1.7.2-intel-2016b
HDF/4.2.11-intel-2016b
HDF/4.2.12-gimkl-7.2017.3
HDF/4.2.12-goolf-7.2.11
HDF5/1.8.17-intel-2016b
merra2wrf/2.0
NCL/6.3.0-intel-2016b
g2clib/1.4.0-intel-2016b
g2lib/1.4.0-intel-2016b
grib_api/1.16.0-intel-2016b
netCDF/4.4.1-intel-2016b
netCDF/4.4.1-intel-2016b-with-HDF4
netCDF-Fortran/4.4.4-intel-2016b
netCDF-Fortran/4.4.4-intel-2016b-with-HDF4
ROOT/v5.34.36
ROOT/v6.08.02

/cm/shared/uniol/modules/devel

Autoconf/2.69-gimpi-6.2016
Autoconf/2.69-gimpi-6.2016
Autotools/20150215
Autotools/20150215-gimpi-6.2016
Boost/1.61.0-gimpi-6.2016
Boost/1.61.0-goolf-5.2.01
Boost/1.61.0-intel-2016b (D)
CMake/2.8.12
CMake/3.6.2 (D)
CMake/3.5.2-gimpi-6.2016
CMake/3.6.1-gimpi-6.2016
CUDA-Profiler/8.0.44
CUDA-Visual-Profiler/8.0.44
Cube/4.3.4
GObject-Introspection/1.52.0-intel-2016b
libXmu/1.1.2-goolf-5.2.01
M4/1.4.17
M4/1.4.17-gimpi-6.2016
Mako/1.0.4-gimpi-6.2016-Python-2.7.12
ncurses/6.0
ncurses/6.0-gimpi-6.2016
Nvidia-Tesla-GDK/352.79
OTF2/2.0
PCRE/8.40
pkg-config/0.29.1-gimpi-6.2016
Qt/4.8.7-goolf-5.2.01
Qt/4.8.7-intel-2016b
SQLite/3.9.2-intel-2016b
SQLite/3.13.0-goolf-5.2.01
SQLite/3.13.0-intel-2016b (D)
SWIG/3.0.8-intel-2016b-Python-2.7.12
SWIG/3.0.12-Python-3.6.1
Scalasca/2.3
Valgrind/3.12.0
xbitmaps/1.1.1
xcb-proto/1.7-goolf-5.2.01-Python-2.7.3
xextproto/7.2.1-goolf-5.2.01
xproto/7.0.23-goolf-5.2.01
xtrans/1.2-goolf-5.2.01
xorg-macros/1.19.0

/cm/shared/uniol/modules/lang

Anaconda3/4.3.0
Bison/3.0.4
Bison/3.0.4-gimpi-6.2016
Gurobi/7.0.2
flex/2.6.0-gimpi-6.2016
Java/8.112
nodejs/4.4.7-intel-2016b
Perl/5.20.3
Python/2.7.3-goolf-5.2.01
Python/2.7.11-intel-2016b
Python/2.7.12
Python/3.5.2 (D)
Python/3.6.1-goolf-5.2.01
R/3.3.1
ScientificPython/2.9.4-Python-2.7.12 (D)
Tcl/8.6.4-intel-2016b
Tcl/8.6.5-gimpi-6.2016
Yasm/1.3.0

/cm/shared/uniol/modules/lib

CFITSIO/3.410
CUDA-Blas/8.0.44
CUDA-FFT/8.0.44
GlobalArrays/5.4b-intel-2016b
libdrm/2.4.70-gimpi-6.2016
libffi/3.2.1-gimpi-6.2016
libglade/2.6.4-intel-2016b
libharu/2.3.0-intel-2016b
libtool/2.4.6
libtool/2.4.6-gimpi-6.2016
libpng/1.6.24
libpng/1.6.24-gimpi-6.2016
libreadline/6.3-gimpi-6.2016
libreadline/6.2-goolf-5.2.01
libxcb/1.8-goolf-5.2.01-Python-2.7.3
libXft/2.3.2-intel-2016b
libxml2/2.9.4
libxml2/2.9.4-gimpi-6.2016
libXpm/3.5.11-goolf-5.2.01
libXpm/3.5.11-intel-2016b
nettle/3.2-gimpi-6.2016
path.py/8.2.1-intel-2016b-Python-3.5.2
SIONlib/1.6.1
testpath/0.3-intel-2016b-Python-3.5.2
Xerces-C++/3.1.3
xforms/1.2.4
zlib/1.2.7-goolf-5.2.01
zlib/1.2.8
zlib/1.2.8-gimpi-6.2016
zoltan/3.83

/cm/shared/uniol/modules/math

Eigen/3.2.9-gimpi-6.2016
GMP/6.1.0-intel-2016b
GMP/6.1.1
METIS/5.1.0-gimpi-6.2016 (D)
MPFR/3.1.4
SCOTCH/6.0.4-gimpi-6.2016 (D)

/cm/shared/uniol/modules/mpi

OpenMPI/1.10.4-GCC-4.9.4
OpenMPI/2.0.1-GCC-5.4.0
OpenMPI/2.0.1-GCC-6.2.0
OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
impi/5.1.3.210

/cm/shared/uniol/modules/numlib

ATLAS/3.10.2
Armadillo/7.500.1
CGAL/4.8.1-gimpi-6.2016
CLHEP/2.1.3.1
CLHEP/2.2.0.4
CLHEP/2.3.1.1
CLHEP/2.3.4.3
cuDNN/5.1-CUDA-8.0.44
cvx/2.1
Eigen/3.2.9
Eigen/3.2.9-gimpi-6.2016
FFTW/3.3.5-gompi-5.2.01
FIAT/1.6.0-intel-2016b-Python-2.7.12
GMP/6.1.1 (D)
GSL/2.1-intel-2016b
GSL/2.3-goolf-6.2.01
GSL/2.3-intel-2016b
Hypre/2.11.1
imkl/11.3.3.210
leda/6.3
LinBox/1.4.0
maple/18
maple/2016 (D)
MATLAB/2016b
MPFR/3.1.4
NTL/9.8.1
Octave/4.0.3
OpenBLAS/0.2.19
Qhull/2015.2
ScaLAPACK/2.0.2
SuiteSparse/4.5.3
stata/13

/cm/shared/uniol/modules/phys

EGSnrc/2017
Geant4/9.6.p04
Geant4/10.01.p01
Geant4/10.01.p03
Geant4/10.02.p01 (D)
Geant4/10.03.p01
fluka/2011.2c

/cm/shared/uniol/modules/toolchain

foss/2016b
gimpi/6.2016
gompi/4.1.10
gompi/5.2.01
gompi/6.2.01 (D)
goolf/4.1.10
goolf/5.2.01
goolf/6.2.01
iimpi/2013b
iimpi/2016b (D)
intel/2013b
intel/2016b (D)

/cm/shared/uniol/modules/tools

ansys/18.0
bzip2/1.0.6-gimpi-6.2016
configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
EasyBuild/3.0.0
expat/2.2.0-gimpi-6.2016
Ghostscript/9.19-intel-2016b
NCO/4.6.0-intel-2016b
parallel/20160622-GCC-5.4.0-2.26
tree/1.7.0
util-linux/2.29-intel-2016b
XZ/5.2.2-gimpi-6.2016
XZ/5.2.2-intel-2016b

/cm/shared/uniol/modules/vis

ATK/2.24.0-intel-2016b
FFmpeg/3.1.3-intel-2016b
fontconfig/2.12.1-gimpi-6.2016
freetype/2.7.1
freetype/2.6.5-gimpi-6.2016
gettext/0.18.2-goolf-5.2.01
gettext/0.19.8-gimpi-6.2016
Glade/3.8.5-intel-2016b-Python-2.7.12
GLib/2.49.5
GLib/2.52.0-intel-2016b
GraphicsMagick/1.3.25-intel-2016b
GTK+/2.24.3-intel-2016b
gv/3.7.4
inputproto/2.3-goolf-5.2.01
kbproto/1.0.6-goolf-5.2.01
OpenCV/3.1.0-intel-2016b
ParaView/5.1.2-goolf-5.2.01-mpi
ParaView/5.1.2-intel-2016b-mpi (D)
Tk/8.6.4-intel-2016b-no-X11
Tk/8.6.5-gimpi-6.2016
UDUNITS/2.2.20-intel-2016b
gettext/0.19.8
gnuplot/5.0.5-intel-2016b
grace/5.1.25
libICE/1.0.8-goolf-5.2.01
libSM/1.2.1-goolf-5.2.01
libX11/1.6.1-goolf-5.2.01
libX11/1.6.3-intel-2016b
libXaw/1.0.12-goolf-5.2.01
libXpm/3.5.11-goolf-5.2.01
libXt/1.1.4-goolf-5.2.01
motif/2.3.6
ncview/2.1.7-intel-2016b
PyCairo/1.10.0-intel-2016b-Python-2.7.12
PyGObject/2.28.6-intel-2016b-Python-2.7.12
PyGTK/2.24.0-intel-2016b-Python-2.7.12
PyOpenGL/3.1.1a1-intel-2016b
X11/20160819-goolf-5.2.01
X11/all

The list above is based on the information gathered by the command

module avail

If you want to create a list of every available software on the cluster, on your own, you can do this by simply using the command:

module spider

The available software will be listed in the format: name, version

@@ Line 276: / Line 276: @@
 *leda/6.3
 *LinBox/1.4.0
-*maple/18
+*[[Maple 2016|maple]]/18
+*[[Maple 2016|maple]]/2016 (D)
 *[[MATLAB 2016|MATLAB]]/2016b
-*[[Maple 2016|maple]]/2016 (D)
 *MPFR/3.1.4
 *NTL/9.8.1