Installed Application Software and Libraries

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Introduction

This page was created to give you an overview of the installed software on the cluster (name/version). The list will be updated at least once per week.

If you find a program in this list, but cant find it on the cluster (for example when looking at the output of the command module avail) it has most likely been hidden. Its also possible that a module isnt listed here because it is hidden. You can find every hidden module here: /cm/shared/uniol/modules/.hidden. If you want to access a hidden module, you have to add a "." in front of the version number, e.g.: 

[abcd1234@hpcl001 ~]$ module load PCRE/8.39-intel-2016b
Lmod has detected the following error:  The following module(s) are unknown: "PCRE/8.39-intel-2016b"

Please check the spelling or version number. Also try "module spider ..."

[abcd1234@hpcl001 ~]$ module load PCRE/.8.39-intel-2016b
[abcd1234@hpcl001 ~]$ ml 

Currently Loaded Modules:
 1) hpc-uniol-env   3) icc/2016.3.210   5) binutils/.2.26-GCCcore-5.4.0   7) impi/5.1.3.210   9) imkl/11.3.3.210  11) PCRE/.8.39-intel-2016b
 2) slurm/current   4) GCCcore/.5.4.0   6) ifort/2016.3.210               8) iimpi/2016b     10) intel/2016b

/cm/local/modulefiles

  • cluster-tools/7.3
  • cmd
  • dot
  • freeipmi/1.5.2
  • gcc/6.1.0
  • ipmitool/1.8.17
  • module-git
  • module-info
  • openldap
  • shared

/cm/shared/uniol/modules/core

  • hpc-uniol-env (L)
  • slurm/current (L)

/cm/shared/uniol/modules/bio

/cm/shared/uniol/modules/cfd

/cm/shared/uniol/modules/chem

/cm/shared/uniol/modules/compiler

  • CUDA-Toolkit/8.0.44
  • CUDA-Toolkit/recent
  • GCC/4.9.4-2.25
  • GCC/5.4.0-2.26
  • GCC/6.2.0-2.27 (D)
  • LLVM/3.8.1-goolf-5.2.01
  • LLVM/3.8.1-intel-2016b
  • LLVM/3.8.1-gimpi-6.2016
  • LLVM/3.9.0-intel-2016b (D)
  • NAG_Fortran/5.2
  • PGI/12.10
  • PGI/15.10
  • PGI/16.10 (D)
  • icc/2016.3.210
  • ifort/2016.3.210

/cm/shared/uniol/modules/data

  • CDO/1.7.2-intel-2016b
  • HDF/4.2.11-intel-2016b
  • HDF5/1.8.17-intel-2016b
  • merra2wrf/2.0
  • NCL/6.3.0-intel-2016b
  • g2clib/1.4.0-intel-2016b
  • g2lib/1.4.0-intel-2016b
  • grib_api/1.16.0-intel-2016b
  • netCDF/4.4.1-intel-2016b
  • netCDF/4.4.1-intel-2016b-with-HDF4
  • netCDF-Fortran/4.4.4-intel-2016b
  • netCDF-Fortran/4.4.4-intel-2016b-with-HDF4
  • ROOT/v5.34.36
  • ROOT/v6.08.02

/cm/shared/uniol/modules/devel

  • Autoconf/2.69-gimpi-6.2016
  • Autoconf/2.69-gimpi-6.2016
  • Autotools/20150215
  • Autotools/20150215-gimpi-6.2016
  • Boost/1.61.0-gimpi-6.2016
  • Boost/1.61.0-goolf-5.2.01
  • Boost/1.61.0-intel-2016b (D)
  • CMake/2.8.12
  • CMake/3.6.2 (D)
  • CMake/3.5.2-gimpi-6.2016
  • CMake/3.6.1-gimpi-6.2016
  • CUDA-Profiler/8.0.44
  • CUDA-Visual-Profiler/8.0.44
  • Cube/4.3.4
  • GObject-Introspection/1.52.0-intel-2016b
  • libXmu/1.1.2-goolf-5.2.01
  • M4/1.4.17
  • M4/1.4.17-gimpi-6.2016
  • Mako/1.0.4-gimpi-6.2016-Python-2.7.12
  • ncurses/6.0
  • ncurses/6.0-gimpi-6.2016
  • Nvidia-Tesla-GDK/352.79
  • OTF2/2.0
  • PCRE/8.40
  • pkg-config/0.29.1-gimpi-6.2016
  • Qt/4.8.7-goolf-5.2.01
  • SQLite/3.9.2-intel-2016b
  • SQLite/3.13.0-gimpi-6.2016
  • SQLite/3.13.0-goolf-5.2.01
  • SQLite/3.13.0-intel-2016b (D)
  • SWIG/3.0.12-Python-3.6.1
  • Scalasca/2.3
  • Valgrind/3.12.0
  • xbitmaps/1.1.1
  • xcb-proto/1.7-goolf-5.2.01-Python-2.7.3
  • xextproto/7.2.1-goolf-5.2.01
  • xproto/7.0.23-goolf-5.2.01
  • xtrans/1.2-goolf-5.2.01
  • xorg-macros/1.19.0

/cm/shared/uniol/modules/lang

  • Anaconda3/4.3.0
  • Bison/3.0.4
  • Bison/3.0.4-gimpi-6.2016
  • Gurobi/7.0.2
  • flex/2.6.0-gimpi-6.2016
  • Java/8.112
  • nodejs/4.4.7-intel-2016b
  • Perl/5.20.3
  • Python/2.7.3-goolf-5.2.01
  • Python/2.7.11-intel-2016b
  • Python/2.7.12
  • Python/3.5.2 (D)
  • Python/3.6.1-goolf-5.2.01
  • R/3.3.1
  • ScientificPython/2.9.4-Python-2.7.12 (D)
  • Tcl/8.6.4-intel-2016b
  • Tcl/8.6.5-gimpi-6.2016
  • Yasm/1.3.0

/cm/shared/uniol/modules/lib

  • CFITSIO/3.410
  • CUDA-Blas/8.0.44
  • CUDA-FFT/8.0.44
  • libdrm/2.4.70-gimpi-6.2016
  • libffi/3.2.1-gimpi-6.2016
  • libtool/2.4.6
  • libtool/2.4.6-gimpi-6.2016
  • libpng/1.6.24
  • libpng/1.6.24-gimpi-6.2016
  • libreadline/6.3-gimpi-6.2016
  • libreadline/6.2-goolf-5.2.01
  • libxcb/1.8-goolf-5.2.01-Python-2.7.3
  • libXft/2.3.2-intel-2016b
  • libxml2/2.9.4
  • libxml2/2.9.4-gimpi-6.2016
  • libXpm/3.5.11-intel-2016b
  • nettle/3.2-gimpi-6.2016
  • path.py/8.2.1-intel-2016b-Python-3.5.2
  • SIONlib/1.6.1
  • testpath/0.3-intel-2016b-Python-3.5.2
  • Xerces-C++/3.1.3
  • xforms/1.2.4
  • zlib/1.2.7-goolf-5.2.01
  • zlib/1.2.8
  • zlib/1.2.8-gimpi-6.2016
  • zoltan/3.83

/cm/shared/uniol/modules/math

  • Eigen/3.2.9-gimpi-6.2016
  • GMP/6.1.0-intel-2016b
  • GMP/6.1.1
  • METIS/5.1.0-gimpi-6.2016 (D)
  • MPFR/3.1.4-gimpi-6.2016
  • SCOTCH/6.0.4-gimpi-6.2016 (D)

/cm/shared/uniol/modules/mpi

  • OpenMPI/1.10.4-GCC-4.9.4
  • OpenMPI/2.0.1-GCC-5.4.0
  • OpenMPI/2.0.1-GCC-6.2.0
  • OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
  • impi/5.1.3.210

/cm/shared/uniol/modules/numlib

  • ATLAS/3.10.2
  • Armadillo/7.500.1
  • CGAL/4.8.1-gimpi-6.2016
  • CLHEP/2.1.3.1
  • CLHEP/2.2.0.4
  • CLHEP/2.3.1.1
  • CLHEP/2.3.4.3
  • cuDNN/5.1-CUDA-8.0.44
  • cvx/2.1
  • Eigen/3.2.9
  • Eigen/3.2.9-gimpi-6.2016
  • FFTW/3.3.5-gompi-5.2.01
  • FIAT/1.6.0-intel-2016b-Python-2.7.12
  • GMP/6.1.1 (D)
  • GSL/2.1-intel-2016b
  • GSL/2.3-goolf-6.2.01
  • GSL/2.3-intel-2016b
  • Hypre/2.11.1
  • imkl/11.3.3.210
  • leda/6.3
  • LinBox/1.4.0
  • maple/18
  • MATLAB/2016b
  • maple/2016 (D)
  • MPFR/3.1.4
  • NTL/9.8.1
  • Octave/4.0.3
  • OpenBLAS/0.2.19
  • Qhull/2015.2
  • ScaLAPACK/2.0.2
  • SuiteSparse/4.5.3
  • stata/13

/cm/shared/uniol/modules/phys

/cm/shared/uniol/modules/toolchain

/cm/shared/uniol/modules/tools

  • ansys/18.0
  • bzip2/1.0.6-gimpi-6.2016
  • configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
  • EasyBuild/3.0.0
  • expat/2.2.0-gimpi-6.2016
  • Ghostscript/9.19-intel-2016b
  • NCO/4.6.0-intel-2016b
  • parallel/20160622-GCC-5.4.0-2.26
  • tree/1.7.0
  • util-linux/2.29-intel-2016b
  • XZ/5.2.2-gimpi-6.2016
  • XZ/5.2.2-intel-2016b

/cm/shared/uniol/modules/vis

  • ATK/2.24.0-intel-2016b
  • FFmpeg/3.1.3-intel-2016b
  • fontconfig/2.12.1-gimpi-6.2016
  • freetype/2.7.1
  • freetype/2.6.5-gimpi-6.2016
  • gettext/0.18.2-goolf-5.2.01
  • gettext/0.19.8-gimpi-6.2016
  • GLib/2.49.5
  • GLib/2.52.0-intel-2016b
  • GraphicsMagick/1.3.25-intel-2016b
  • gv/3.7.4
  • inputproto/2.3-goolf-5.2.01
  • kbproto/1.0.6-goolf-5.2.01
  • OpenCV/3.1.0-intel-2016b
  • ParaView/5.1.2-goolf-5.2.01-mpi
  • ParaView/5.1.2-intel-2016b-mpi (D)
  • Tk/8.6.4-intel-2016b-no-X11
  • Tk/8.6.5-gimpi-6.2016
  • UDUNITS/2.2.20-intel-2016b
  • gettext/0.19.8
  • gnuplot/5.0.5-intel-2016b
  • grace/5.1.25
  • libICE/1.0.8-goolf-5.2.01
  • libSM/1.2.1-goolf-5.2.01
  • libX11/1.6.1-goolf-5.2.01
  • libX11/1.6.3-intel-2016b
  • libXaw/1.0.12-goolf-5.2.01
  • libXpm/3.5.11-goolf-5.2.01
  • libXt/1.1.4-goolf-5.2.01
  • motif/2.3.6
  • ncview/2.1.7-intel-2016b
  • X11/20160819-goolf-5.2.01
  • X11/all

The list above is based on the information gathered by the command 

module avail

If you want to create a list of every available software on the cluster, on your own, you can do this by simply using the command: 

module spider

The available software will be listed in the format: name, version

Retrieved from "https://wiki.hpcuser.uni-oldenburg.de/index.php?title=Installed_Application_Software_and_Libraries&oldid=3900"