Difference between revisions of "SNAP 2016"
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== Installed Version == | == Installed Version == | ||
These versions are installed and and currently available on environment ''hpc-env/6.4'': | |||
'''SNAP/1.0beta.23'''-foss-2017b | |||
'''SNAP-HMM/2013-11-29'''-GCCcore-6.4.0 | |||
== Using SNAP == | == Using SNAP == | ||
SNAP is installed at the environment hpc-env/6.4 which is to be loaded at first in order to load the SNAP module: | SNAP is installed at the environment hpc-env/6.4 which is to be loaded at first in order to load the SNAP module: | ||
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module load hpc-env/6.4 | module load hpc-env/6.4 | ||
module load SNAP | module load SNAP | ||
''or'' | |||
module load hpc-env/6.4 | |||
module load SNAP-HMM | |||
Now you can proceed according to the scheme ''snap-aligner <command>'' | Now you can proceed according to the scheme ''snap-aligner <command>'' | ||
Latest revision as of 14:26, 28 June 2019
Introduction
SNAP, which stands for Scalable Nucleotide Alignment Program is a fast and accurate read aligner for high-throughput sequencing data. This SNAP version is not to be confused with the other version of SNAP, namely the Semi-HMM-based Nucleic Acid Parser which you can find here.
Installed Version
These versions are installed and and currently available on environment hpc-env/6.4:
SNAP/1.0beta.23-foss-2017b SNAP-HMM/2013-11-29-GCCcore-6.4.0
Using SNAP
SNAP is installed at the environment hpc-env/6.4 which is to be loaded at first in order to load the SNAP module:
module load hpc-env/6.4 module load SNAP or module load hpc-env/6.4 module load SNAP-HMM
Now you can proceed according to the scheme snap-aligner <command>
Documentation
For further information please consult the developer's website where you can find a quick start guide as well as a user manual. Please note that the commands displayed there may not be transferable one-to-one. In such cases, replace the 'snap' command with 'snap-aligner'.
