Difference between revisions of "SNAP-HMM 2016"
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== Installed version == | == Installed version == | ||
Although the program is actually only called SNAP, it was installed with the suffix '-HMM' to distinguish it from the other SNAP version. | Although the program is actually only called SNAP, it was installed with the suffix '-HMM' to distinguish it from the [https://wiki.hpcuser.uni-oldenburg.de/index.php?title=SNAP_2016 other SNAP version]. | ||
You can find both version by typing in | You can find both version by typing in | ||
module spider snap | module spider snap | ||
Revision as of 10:45, 1 August 2018
Introduction
SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.
Installed version
Although the program is actually only called SNAP, it was installed with the suffix '-HMM' to distinguish it from the other SNAP version. You can find both version by typing in
module spider snap
The correct and only SNAP-HMM version is SNAP-HMM/2013-11-29-GCCcore-6.4.0 and can be loaded within the hpc-env/6.4 environment.
module load hpc-env/6.4 module load SNAP-HMM
Using SNAP-HMM
For the SNAP commands to work without any difficulties, you should change to the installation directory.
$ cd /cm/shared/uniol/software/6.4/SNAP-HMM/2013-11-29-GCCcore-6.4.0
Now you can proceed according to the scheme snap <command>
Eg.:
snap HMM/thale DNA/thale.dna.gz snap HMM/worm DNA/worm.dna.gz
Documentation
For further information consult the readme file or visit the developer's website.
