Difference between revisions of "Pychopper 2016"
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== Introduction == | == Introduction == | ||
Pychopper is a tool to identify, orient and trim full-length Nanopore cDNA reads. The tool is also able to rescue fused reads. [[https://surfer.nmr.mgh.harvard.edu/fswiki 1]] | |||
== Installed version == | == Installed version == | ||
The currently installed version is available on environment ''hpc-env/6.4'': | The currently installed version is available on environment ''hpc-env/6.4'': | ||
Pychopper/''0.4.0''-intel-2018a-Python-3.7.0 | Pychopper/'''0.4.0'''-intel-2018a-Python-3.7.0 | ||
== Using Pychopper == | == Using Pychopper == | ||
| Line 22: | Line 22: | ||
Always remember: this command is case sensitive! | Always remember: this command is case sensitive! | ||
To get an overview about the basic commands type as follows (after loading the modules): | |||
cdna_classifier.py -h | |||
== Documentation == | == Documentation == | ||
The | The repository and the corresponding README file can be found [https://github.com/nanoporetech/pychopper here]. | ||
Latest revision as of 16:38, 8 December 2020
Introduction
Pychopper is a tool to identify, orient and trim full-length Nanopore cDNA reads. The tool is also able to rescue fused reads. [1]
Installed version
The currently installed version is available on environment hpc-env/6.4:
Pychopper/0.4.0-intel-2018a-Python-3.7.0
Using Pychopper
If you want to find out more about Pychopper on the HPC Cluster, you can use the command
module spider Pychopper
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load Pychopper
Always remember: this command is case sensitive!
To get an overview about the basic commands type as follows (after loading the modules):
cdna_classifier.py -h
Documentation
The repository and the corresponding README file can be found here.
