Install wrf gcc ompi double.sh
From HPC users
Jump to navigationJump to search
Note:
- The commands in the box below has to be stored in file called install_wrf_gcc_ompi_double.sh.
- To execute the script please set the execution permissions by chmod 755 install_wrf_gcc_ompi_double.sh.
- usage is install_wrf_gcc_ompi_double.sh WRF_RELEASE DIR_TO_TAR_GZ_FILES
- The final installation of WRF and WPS will be in the directories WRFV3_v${WRF_RELEASE}_gcc_ompi_double and WPS_v${WRF_RELEASE]_gcc_ompi_double, respectively
- The orginal folders WRFV3 and WPS will be removed during the installation process!
#!/bin/bash
# Web site: http://www.mmm.ucar.edu/wrf/OnLineTutorial/index.htm
HELP_MSG="Installation program for WRF on flow with gcc and openmpi with double precision\n\nusage:\n install_wrf_gcc_ompi.sh WRF_VERSION WRF_TAR_DIR\n"
# check number od cmdline args
if [ $# != 2 ]; then
echo -e $HELP_MSG
exit 1
fi
WRF_VERSION=$1
WPS_SRC_DIR=$2
BUILD_SUFFIX=v${WRF_VERSION}_gcc_ompi_double
export WRF_INST_DIR=WRFV3_$BUILD_SUFFIX
export WPS_INST_DIR=WPS_$BUILD_SUFFIX
echo "build $WRF_INST_DIR..."
# load modules
if [ "$LOADEDMODULES" != "" ]; then
echo 'clean and load module'
echo "Please answer following quesion with 'y' to enable a clean setup!"
module clear
fi
module load shared
module load netcdf/gcc/64/4.1.1
module load openmpi/gcc/64/1.4.3
module load gcc/4.7.1
module load jasper/1.900.1/gcc/4.7.1
# check untar files
echo "untar files..."
if [ ! -e $WPS_SRC_DIR/WRFV${WRF_VERSION}.TAR.gz ]; then
echo -e "Source tar-ball\n $WPS_SRC_DIR/WRFV${WRF_VERSION}.TAR.gz\n does not exist!"
exit 1
fi
if [ ! -e $WPS_SRC_DIR/WPSV${WRF_VERSION}.TAR.gz ]; then
echo -e "Source tar-ball\n $WPS_SRC_DIR/WRFV${WRF_VERSION}.TAR.gz\n does not exist!"
exit 1
fi
rm -rf WRFV3 WPS $WRF_INST_DIR $WPS_INST_DIR
tar -xzf $WPS_SRC_DIR/WRFV${WRF_VERSION}.TAR.gz
tar -xzf $WPS_SRC_DIR/WPSV${WRF_VERSION}.TAR.gz
# mv build
mv WRFV3 $WRF_INST_DIR
mv WPS $WPS_INST_DIR
##################################################################
# go into directory WRF to make WRF with single precision
# for wps
##################################################################
cd $WRF_INST_DIR
# set openMPI compilers
export OMPI_MPICC=gcc
export OMPI_MPIF90=gfortran
export OMPI_MPIF77=gfortran
export OMPI_MPIFC=gfortran
# parallel build on 8 cores
export J='-j 8'
# set right netcdf by
export NETCDF=${NETCDFHOME}
# set jasper by
export JASPERINC=/cm/shared/apps/jasper/1.900.1/gcc/4.7.1/include
export JASPERLIB=/cm/shared/apps/jasper/1.900.1/gcc/4.7.1/lib
sed -e 's/I_really_want_to_output_grib2_from_WRF = "FALSE"/I_really_want_to_output_grib2_from_WRF = "TRUE"/' \
arch/Config_new.pl > arch/Config_new.pl_new
mv arch/Config_new.pl_new arch/Config_new.pl
# enable large file support
export WRFIO_NCD_LARGE_FILE_SUPPORT=1
# linux intel cluster
export WRF_EM_CORE=1
# run configure and select
# 25 (Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar), then
# 1 (basic)
./clean -a >& /dev/null
case $WRF_VERSION in
3.4.1 )
echo -e "25\n1\n" | ./configure &> configure.log
;;
3.4 )
echo -e "25\n1\n" | ./configure &> configure.log
;;
* )
echo "WRV3 release not supported yet. Please configure!"
exit 1
;;
esac
# make settings for intel mpi
sed configure.wrf -e 's/^DM_CC.*/DM_CC = mpicc -DMPI2_SUPPORT/' \
>configure.wrf.impi
mv configure.wrf.impi configure.wrf
# compile and log compilation
echo 'compile WRF for WPS in single precision...'
./compile em_real >& compile.log
if [ $? != "0" ]; then
echo "Error in building WRF"
exit 1
fi
# check existance of binaries
BIN_NAMES="main/real.exe main/ndown.exe main/nup.exe main/wrf.exe main/tc.exe"
for name in $BIN_NAMES; do
if [ ! -x $name ]; then
echo "Binary $name not exist! WRF was not build correctly!"
exit 1
fi
done
##################################################################
# go into directory WPS to make WPS
##################################################################
# make now WPS
# so change directory and clean it for safity
cd ../$WPS_INST_DIR
echo "build $WPS_INST_DIR..."
./clean -a >& /dev/null
#
# patch files
sed -e 's/BIG_ENDIAN/MY_BIG_ENDIAN/g' \
-e 's/LITTLE_ENDIAN/MY_LITTLE_ENDIAN/g' geogrid/src/read_geogrid.c > geogrid/src/read_geogrid.c_patched
mv geogrid/src/read_geogrid.c_patched geogrid/src/read_geogrid.c
# run configure and select
# 19 (3.4), 23 (v3.4.1)
case $WRF_VERSION in
3.4.1 )
echo -e "23" | ./configure &> configure.log
;;
3.4 )
echo -e "19" | ./configure &> configure.log
;;
* )
echo "WPS release not supported yet. Please configure!"
exit 1
;;
esac
# make settings for intel mpi
sed -e 's/^WRF_DIR.*/WRF_DIR = ..\/$(WRF_INST_DIR)/' \
-e 's/-convert big_endian/-convert big_endian -fdefault-real-8/g' \
-e 's/g95/gfortran/g' -e 's/^DM_FC.*/DM_FC = mpif90/' \
-e 's/^DM_CC.*/DM_CC = mpicc/' configure.wps > configure.wps.tmp
mv configure.wps.tmp configure.wps
# compile and log compilation
echo 'compile WPS...'
./compile >& compile.log
if [ $? != "0" ]; then
echo "Error in building WPS"
exit 1
fi
# check existance of binaries
BIN_NAMES="geogrid/src/geogrid.exe metgrid/src/metgrid.exe ungrib/src/ungrib.exe util/rd_intermediate.exe"
for name in $BIN_NAMES; do
if [ ! -x $name ]; then
echo "Binary $name not exist! WPS was not build correctly!"
exit 1
fi
done
# and go back to root install dir
cd ..
##################################################################
# Now build the final version of WRF again with double precision
##################################################################
rm -rf $WRF_INST_DIR
tar -xzf $WPS_SRC_DIR/WRFV${WRF_VERSION}.TAR.gz
# mv build
mv WRFV3 $WRF_INST_DIR
##################################################################
# go into directory WRF to make WRF with double precision
##################################################################
cd $WRF_INST_DIR
# set jasper by
sed -e 's/I_really_want_to_output_grib2_from_WRF = "FALSE"/I_really_want_to_output_grib2_from_WRF = "TRUE"/' arch/Config_new.pl > arch/Config_new.pl_new
mv arch/Config_new.pl_new arch/Config_new.pl
#run configure and select
# 25 (Linux x86_64 i486 i586 i686, ifort compiler with icc (dmpar), then
# 1 (basic)
./clean -a >& /dev/null
case $WRF_VERSION in
3.4.1 )
echo -e "25\n1\n" | ./configure &> configure.log
;;
3.4 )
echo -e "25\n1\n" | ./configure &> configure.log
;;
* )
echo "WRV3 release not supported yet. Please configure!"
exit 1
;;
esac
# make settings for intel mpi
sed configure.wrf -e 's/^DM_CC.*/DM_CC = mpicc -DMPI2_SUPPORT/' \
-e 's/^RWORDSIZE.*/RWORDSIZE = 8/g' \
-e 's/^PROMOTION.*/PROMOTION = -fdefault-real-8/g' \
>configure.wrf.impi
mv configure.wrf.impi configure.wrf
# compile and log compilation
echo 'compile final WRF with double precision...'
./compile em_real >& compile.log
if [ $? != "0" ]; then
echo "Error in building WRF"
exit 1
fi
# check existance of binaries
BIN_NAMES="main/real.exe main/ndown.exe main/nup.exe main/wrf.exe main/tc.exe"
for name in $BIN_NAMES; do
if [ ! -x $name ]; then
echo "Binary $name not exist! WRF was not build correctly!"
exit 1
fi
done
#################################################################################
# go back to root directory
################################################################################
cd ..
