GffCompare 2016

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The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF). ¹

Installed version

The currently installed version is available on environment hpc-env/6.4:


Using GffCompare

If you want to find out more about GffCompare on the HPC Cluster, you can use the command

module spider GffCompare

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env 6.4
module load GffCompare

Always remember: this command is case sensitive!

To get more Information about how to use the program (e.g. commands, options) just type into the shell:


(Module must be loaded first!)


More information are availabe either at GitHub or at the CCB page .