Difference between revisions of "GenomeTools 2016"
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... on environment ''hpc-env/8.3'': | ... on environment ''hpc-env/8.3'': | ||
*'''GenomeTools/1.6.1''-GCC-8.3.0 | *'''GenomeTools/1.6.1'''-GCC-8.3.0 | ||
... on environment ''hpc-env/6.4'': | ... on environment ''hpc-env/6.4'': | ||
Latest revision as of 09:29, 27 May 2021
Introduction
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules. ¹
Installed version(s)
The following versions are installed and currently available...
... on environment hpc-env/8.3:
- GenomeTools/1.6.1-GCC-8.3.0
... on environment hpc-env/6.4:
- genometools/1.5.10-foss-2017b ## please mind the different upper/lower cases when loading the desired module
Loading / Using GenomeTools
To load the desired version of the module, use the module load command, e.g.
module load hpc-env/8.3 module load GenomeTools
Always remember: this command is case sensitive!
After loading the GenomeTools module, you can get some basic information by calling
gt -help
GenomeTool(gt) will print out a list of all tools available. If you want to know more about one of the listed tools you can use the extended help function:
gt <tool_name> -help
Documentation
A list of documentations and manuals can be found here.
