Pychopper 2016

Introduction

Pychopper is a tool to identify, orient and trim full-length Nanopore cDNA reads. The tool is also able to rescue fused reads. [1]

Installed version

The currently installed version is available on environment hpc-env/6.4:

Pychopper/0.4.0-intel-2018a-Python-3.7.0

Using Pychopper

If you want to find out more about Pychopper on the HPC Cluster, you can use the command

module spider Pychopper

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command, e.g.

module load hpc-env 6.4
module load Pychopper

Always remember: this command is case sensitive!

To get an overview about the basic commands type as follows (after loading the modules):

cdna_classifier.py -h

Documentation

The repository and the corresponding README file can be found here.