SNAP-HMM 2016

Introduction

SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.

Installed version

Although the program is actually only called SNAP, it was installed with the suffix '-HMM' to distinguish it from the other SNAP version. You can find both version by typing in

module spider snap

The correct and only SNAP-HMM version is SNAP-HMM/2013-11-29-GCCcore-6.4.0 and can be loaded within the hpc-env/6.4 environment.

module load hpc-env/6.4
module load SNAP-HMM/2013-11-29-GCCcore-6.4.0

Using SNAP-HMM

For the SNAP commands to work without any difficulties, you should change to the installation directory.

 $ cd /cm/shared/uniol/software/6.4/SNAP-HMM/2013-11-29-GCCcore-6.4.0

Now you can proceed according to the scheme snap <command>

Eg.:

snap HMM/thale DNA/thale.dna.gz
snap HMM/worm DNA/worm.dna.gz

Documentation

For further information read the readme file or visit the developer's website.