Difference between revisions of "GffCompare 2016"
Schwietzer (talk | contribs) (Created page with "== Introduction == The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a ...") |
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The currently installed version is available on environment ''hpc-env/6.4'': | The currently installed version is available on environment ''hpc-env/6.4'': | ||
'''GffCompare/0.10.1-foss-2017b''' | |||
'''GffCompare/0.10.6-foss-2017b''' | '''GffCompare/0.10.6-foss-2017b''' | ||
Latest revision as of 13:13, 28 June 2019
Introduction
The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF). ¹
Installed version
The currently installed version is available on environment hpc-env/6.4:
GffCompare/0.10.1-foss-2017b GffCompare/0.10.6-foss-2017b
Using GffCompare
If you want to find out more about GffCompare on the HPC Cluster, you can use the command
module spider GffCompare
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load GffCompare
Always remember: this command is case sensitive!
To get more Information about how to use the program (e.g. commands, options) just type into the shell:
gffcompare
(Module must be loaded first!)
Documentation
More information are availabe either at GitHub or at the CCB page .
