Difference between revisions of "SNAP-HMM 2016"
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For the SNAP-HMM commands to work without any difficulties, you should change to the installation directory. | For the SNAP-HMM commands to work without any difficulties, you should change to the installation directory. | ||
$ cd | $ cd $EBROOTSNAPMINHMM | ||
Now you can proceed according to the scheme ''snap <command>'' | Now you can proceed according to the scheme ''snap <command>'' | ||
Revision as of 13:00, 25 March 2021
Introduction
SNAP-HMM is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.
Installed Version
Although the program is actually only called SNAP, it was installed with the suffix '-HMM' to distinguish it from the other SNAP version. You can find both version by typing in
module spider snap
The following versions of SNAP-HMM are installed and currently available...
... on environment hpc-env/8.3:
- SNAP-HMM/20190603-GCC-8.3.0
... on environment hpc-env/6.4:
- SNAP-HMM/2013-11-29-GCCcore-6.4.0
To load the desired version of the module, use the module load command, e.g.
module load hpc-env/8.3 module load SNAP-HMM
Using SNAP-HMM
For the SNAP-HMM commands to work without any difficulties, you should change to the installation directory.
$ cd $EBROOTSNAPMINHMM
Now you can proceed according to the scheme snap <command>
Eg.:
snap HMM/thale DNA/thale.dna.gz snap HMM/worm DNA/worm.dna.gz
Documentation
For further information consult the readme file or visit the developer's website.
