Difference between revisions of "SNAP-HMM 2016"
From HPC users
Jump to navigationJump to search
Schwietzer (talk | contribs) |
Schwietzer (talk | contribs) |
||
| Line 1: | Line 1: | ||
== Introduction == | == Introduction == | ||
SNAP is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser. | SNAP-HMM is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser. | ||
| Line 13: | Line 13: | ||
== Using SNAP-HMM == | == Using SNAP-HMM == | ||
For the SNAP commands to work without any difficulties, you should change to the installation directory. | For the SNAP-HMM commands to work without any difficulties, you should change to the installation directory. | ||
$ cd /cm/shared/uniol/software/6.4/SNAP-HMM/2013-11-29-GCCcore-6.4.0 | $ cd /cm/shared/uniol/software/6.4/SNAP-HMM/2013-11-29-GCCcore-6.4.0 | ||
Revision as of 09:56, 1 August 2018
Introduction
SNAP-HMM is a general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. SNAP is an acroynm for Semi-HMM-based Nucleic Acid Parser.
Installed Version
Although the program is actually only called SNAP, it was installed with the suffix '-HMM' to distinguish it from the other SNAP version. You can find both version by typing in
module spider snap
The correct and only SNAP-HMM version is SNAP-HMM/2013-11-29-GCCcore-6.4.0 and can be loaded within the hpc-env/6.4 environment.
module load hpc-env/6.4 module load SNAP-HMM
Using SNAP-HMM
For the SNAP-HMM commands to work without any difficulties, you should change to the installation directory.
$ cd /cm/shared/uniol/software/6.4/SNAP-HMM/2013-11-29-GCCcore-6.4.0
Now you can proceed according to the scheme snap <command>
Eg.:
snap HMM/thale DNA/thale.dna.gz snap HMM/worm DNA/worm.dna.gz
Documentation
For further information consult the readme file or visit the developer's website.
