Difference between revisions of "Bcl2fastq2"
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== Introduction == | == Introduction == | ||
The Illumina sequencing instruments generate per-cycle base call (BCL) files at the end ofthe sequencingrun. A majority of analysis applications use per-read FASTQ files as input for analysis. '''bcl2fastq''' can be used to convert base call (BCL) files from a sequencingrun into FASTQ files. | |||
bcl2fastq supports the following instruments: | |||
*MiniSeq | |||
*MiSeq | |||
*NextSeq 500, 550 | |||
*HiSeq X | |||
*HiSeq 2000, 2500, 3000, 4000 | |||
*NovaSeq 5000, 6000 | |||
== Installed version == | == Installed version == | ||
Latest revision as of 10:28, 29 March 2017
Introduction
The Illumina sequencing instruments generate per-cycle base call (BCL) files at the end ofthe sequencingrun. A majority of analysis applications use per-read FASTQ files as input for analysis. bcl2fastq can be used to convert base call (BCL) files from a sequencingrun into FASTQ files.
bcl2fastq supports the following instruments:
- MiniSeq
- MiSeq
- NextSeq 500, 550
- HiSeq X
- HiSeq 2000, 2500, 3000, 4000
- NovaSeq 5000, 6000
Installed version
The currently installed version of bcl2fastq is 2.18.0.12.
Documentation
The full documentation for bcl2fasatq can be found here.
