Difference between revisions of "Canu 2016"
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The currently installed version is available... | The currently installed version is available... | ||
on environment ''hpc-env/8.3'': | |||
*'''canu/2.1.1'''-GCCcore-8.3.0 | |||
on environment ''hpc-env/6.4'': | on environment ''hpc-env/6.4'': | ||
*'''canu/1.8'''-foss-2017b-Perl-5.28.0 | |||
on environment hpc-uniol-env: | on environment hpc-uniol-env: | ||
*'''canu/1.7'''-intel-2016b | |||
== Using canu == | == Using canu == | ||
| Line 18: | Line 21: | ||
This will show you basic informations e.g. a short description and the currently installed version. | This will show you basic informations e.g. a short description and the currently installed version. | ||
To load the desired version of the module, use the command, e.g. | To load the desired version of the module, use the command, e.g. | ||
module load hpc-env | module load hpc-env 8.3 | ||
module load canu | module load canu | ||
Always remember: this command is case sensitive! | Always remember: this command is case sensitive! | ||
If you loaded the canu module loke shown above, you can just type in ... | |||
canu | |||
... to get some basic information about how to use canu. | |||
== Documentation == | == Documentation == | ||
The full documentation can be found [https://canu.readthedocs.io/en/latest/tutorial.html#tutorial here]. | The full documentation can be found [https://canu.readthedocs.io/en/latest/tutorial.html#tutorial here]. | ||
Latest revision as of 13:05, 19 August 2021
Introduction
Canu assembles reads from PacBio RS II or Oxford Nanopore MinION instruments into uniquely-assemblable contigs, unitigs. Canu owes lots of it design and code to celera-assembler.¹
Installed version
The currently installed version is available...
on environment hpc-env/8.3:
- canu/2.1.1-GCCcore-8.3.0
on environment hpc-env/6.4:
- canu/1.8-foss-2017b-Perl-5.28.0
on environment hpc-uniol-env:
- canu/1.7-intel-2016b
Using canu
If you want to find out more about canu on the HPC Cluster, you can use the command
module spider canu
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 8.3 module load canu
Always remember: this command is case sensitive!
If you loaded the canu module loke shown above, you can just type in ...
canu
... to get some basic information about how to use canu.
Documentation
The full documentation can be found here.
