Difference between revisions of "STAR 2016"
From HPC users
Jump to navigationJump to search
Schwietzer (talk | contribs) |
Schwietzer (talk | contribs) |
||
| (One intermediate revision by the same user not shown) | |||
| Line 11: | Line 11: | ||
... on environment ''hpc-env/6.4'': | ... on environment ''hpc-env/6.4'': | ||
'''STAR/2.6.1d-foss-2017b''' | '''STAR/2.6.1d-foss-2017b''' | ||
... on environment ''hpc-env/8.3'': | |||
'''STAR/2.7.10a'''-GCC-8.3.0 | |||
== Using STAR == | == Using STAR == | ||
| Line 22: | Line 25: | ||
To load the desired version of the module, use the command, e.g. | To load the desired version of the module, use the command, e.g. | ||
module load hpc-env/ | module load hpc-env/8.3 | ||
module load STAR | module load STAR | ||
Always remember: this command is case sensitive! | Always remember: this command is case sensitive! | ||
== Documentation == | == Documentation == | ||
A short summary about the functions and benefits of STAR can be read [http://gingeraslab.cshl.edu/STAR/STARintro.htm here] <br/> | A short summary about the functions and benefits of STAR can be read [http://gingeraslab.cshl.edu/STAR/STARintro.htm here] <br/> | ||
The full documentation can be found [http://labshare.cshl.edu/shares/gingeraslab/www-data/dobin/STAR/Releases/FromGitHub/STAR-2.6.1d/doc/STARmanual.pdf here] (pdf reader required). | The full documentation can be found [http://labshare.cshl.edu/shares/gingeraslab/www-data/dobin/STAR/Releases/FromGitHub/STAR-2.6.1d/doc/STARmanual.pdf here] (pdf reader required). | ||
Latest revision as of 15:12, 22 February 2022
Introduction
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays
Installed version
These versions are installed and and currently available ...
... on envirnoment hpc-uniol-env:
STAR/2.5.4b-intel-2016b
... on environment hpc-env/6.4:
STAR/2.6.1d-foss-2017b
... on environment hpc-env/8.3:
STAR/2.7.10a-GCC-8.3.0
Using STAR
If you want to find out more about STAR on the HPC Cluster, you can use the command
module spider STAR
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env/8.3 module load STAR
Always remember: this command is case sensitive!
Documentation
A short summary about the functions and benefits of STAR can be read here
The full documentation can be found here (pdf reader required).
