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Latest revision as of 11:42, 17 January 2019
Introduction
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). HISAT2 is the successor of HISAT and [TopHat 2016 | TopHat2].
Installed version
The currently installed version is available on environment hpc-env/6.4:
HISAT2/2.1.0-intel-2018a
Using HISAT2
If you want to find out more about HISAT2 on the HPC Cluster, you can use the command
module spider HISAT2
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load HISAT2
Always remember: this command is case sensitive!
To get familiar with the commands and options available for HISAT2, you can use the help function:
hisat2 --help
Documentation
The program's website can be found here.
