Stacks

From HPC users
Jump to navigationJump to search

Introduction

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Installed version

The currently installed version of Stacks is 1.42.

Using Stacks on the HPC cluster

Documentation

A manual for Stacks can be found here here.