Difference between revisions of "Sickle 2016"
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Schwietzer (talk | contribs) (Created page with "== Introduction == Sickle is a windowed adaptive trimming tools for FASTQ files. Beside sliding window, Sickle uses quality and length thresholds to determine and trim low qu...") |
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There is currently just one version of Sickle installed: | There is currently just one version of Sickle installed: | ||
''' | Environment: '''hpc-env/6.4''' | ||
*'''sickle/1.33-foss-2017b''' | *'''sickle/1.33-foss-2017b''' | ||
Latest revision as of 10:42, 16 August 2018
Introduction
Sickle is a windowed adaptive trimming tools for FASTQ files. Beside sliding window, Sickle uses quality and length thresholds to determine and trim low quality bases at both 3' end and 5' end of the reads.
Installed version
There is currently just one version of Sickle installed:
Environment: hpc-env/6.4
- sickle/1.33-foss-2017b
Using Sickle
To use Sickle, you just have to load the corresponding environment and module.
module load hpc-env/6.4 module load sickle
Documentation
The full documentation can be found here.
