Difference between revisions of "RStudio 2016"
Schwietzer (talk | contribs) |
Schwietzer (talk | contribs) |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 12: | Line 12: | ||
This version is installed and currently available on environment ''hpc-env/6.4'': | This version is installed and currently available on environment ''hpc-env/6.4'': | ||
'''RStudio/1.2.5019'''-intel-2018a | '''RStudio/1.2.5019'''-intel-2018a | ||
This version is installed and currently available on environment ''hpc-env/8.3'': | |||
'''RStudio/1.4.1106'''-foss-2019b-Java-11-R-4.0.2 | |||
== Using RStudio == | == Using RStudio == | ||
To use RStudio, you need to be sure to have X11 forwarding enabled. <br/> | To use RStudio, you need to be sure to have X11 forwarding enabled. <br/> | ||
If you | If you login using Linux, you just have to set the option ''-X'' on your ssh command, e.g.: | ||
ssh abcd1234@carl.hpc.uni-oldenburg.de '''-X''' | ssh abcd1234@carl.hpc.uni-oldenburg.de '''-X''' | ||
On windows, it depends on the software you use to get a ssh connection to the cluster. | On windows, it depends on the software you use to get a ssh connection to the cluster. | ||
On programs like MobaXterm, you should be able to tick in the option 'X11-forwarding' <br> | On programs like MobaXterm, you should be able to tick in the option 'X11-forwarding' <br> | ||
Please have in mind, that the login nodes are just for running small scripts and for time-constrained testing purposes. <br/> | |||
Should you need to do time consuming calculations with the RStudi GUI, please create a [https://wiki.hpcuser.uni-oldenburg.de/index.php?title=Interactive_Jobs interactive session]. | |||
If you want to find out more about RStudio on the HPC cluster, you can use the command | If you want to find out more about RStudio on the HPC cluster, you can use the command | ||
| Line 31: | Line 39: | ||
To load the desired version of the module, use the command, e.g. | To load the desired version of the module, use the command, e.g. | ||
module load hpc-env | module load hpc-env/8.3 | ||
module load RStudio | module load RStudio | ||
Always remember: this command is case sensitive! <br/> | Always remember: this command is case sensitive! <br/> | ||
== Documentation == | == Documentation == | ||
For RStudio there is a manual archive available on theyr [https://support.rstudio.com/hc/en-us/categories/200035113-Documentation website]. | For RStudio there is a manual archive available on theyr [https://support.rstudio.com/hc/en-us/categories/200035113-Documentation website]. | ||
Latest revision as of 13:44, 25 March 2021
Introduction
RStudio is an integrated development environment (IDE) for the R programming language. Some of its features include:
- Customizable workbench with all of the tools required to work with R in one place (console, source, plots, workspace, help, history, etc.).
- Syntax highlighting editor with code completion.
- Execute code directly from the source editor (line, selection, or file).
- Full support for authoring Sweave and TeX documents. ¹
RStudio is available as server or desktop versions. On this cluster, the desktop version is installed.
Installed version(s)
This version is installed and currently available on environment hpc-env/6.4:
RStudio/1.2.5019-intel-2018a
This version is installed and currently available on environment hpc-env/8.3:
RStudio/1.4.1106-foss-2019b-Java-11-R-4.0.2
Using RStudio
To use RStudio, you need to be sure to have X11 forwarding enabled.
If you login using Linux, you just have to set the option -X on your ssh command, e.g.:
ssh abcd1234@carl.hpc.uni-oldenburg.de -X
On windows, it depends on the software you use to get a ssh connection to the cluster.
On programs like MobaXterm, you should be able to tick in the option 'X11-forwarding'
Please have in mind, that the login nodes are just for running small scripts and for time-constrained testing purposes.
Should you need to do time consuming calculations with the RStudi GUI, please create a interactive session.
If you want to find out more about RStudio on the HPC cluster, you can use the command
module spider RStudio
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env/8.3 module load RStudio
Always remember: this command is case sensitive!
Documentation
For RStudio there is a manual archive available on theyr website.
