Difference between revisions of "RStudio 2016"
Schwietzer (talk | contribs) (Created page with "== Introduction == RStudio is an integrated development environment (IDE) for the R programming language. Some of its features include: * Customizable workbench with all of t...") |
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== Using RStudio == | == Using RStudio == | ||
To use RStudio, you need to be sure to have X11 forwarding enabled. | |||
if you logg in using Linux, you just have to set the option ''-X'' on your ssh command, e.g.: | |||
ssh abcd1234@carl.hpc.uni-oldenburg.de '''-X''' | |||
On windows, it depends on the software you use to get a ssh connection to the cluster. | |||
On programs like MobaXterm, you should be able to tick in the option 'X11-forwarding' <br> | |||
If you want to find out more about RStudio on the HPC cluster, you can use the command | If you want to find out more about RStudio on the HPC cluster, you can use the command | ||
| Line 19: | Line 26: | ||
module spider RStudio | module spider RStudio | ||
This will show you basic informations e.g. a short description and the currently installed version. | This will show you basic informations e.g. a short description and the currently installed version. <br> | ||
To load the desired version of the module, use the command, e.g. | To load the desired version of the module, use the command, e.g. | ||
| Line 26: | Line 34: | ||
module load RStudio | module load RStudio | ||
Always remember: this command is case sensitive! | Always remember: this command is case sensitive! <br/> | ||
Please have in mind, that the login nodes are just for running small scripts and for time-constrained testing purposes. | Please have in mind, that the login nodes are just for running small scripts and for time-constrained testing purposes. | ||
Should you need to do time consuming calculations with the RStudi GUI, please create a [https://wiki.hpcuser.uni-oldenburg.de/index.php?title=Interactive_Jobs interactive session]. | Should you need to do time consuming calculations with the RStudi GUI, please create a [https://wiki.hpcuser.uni-oldenburg.de/index.php?title=Interactive_Jobs interactive session]. | ||
== Documentation == | == Documentation == | ||
For RStudio there is a manual archive available on theyr [https://support.rstudio.com/hc/en-us/categories/200035113-Documentation website]. | For RStudio there is a manual archive available on theyr [https://support.rstudio.com/hc/en-us/categories/200035113-Documentation website]. | ||
Revision as of 10:07, 14 November 2019
Introduction
RStudio is an integrated development environment (IDE) for the R programming language. Some of its features include:
- Customizable workbench with all of the tools required to work with R in one place (console, source, plots, workspace, help, history, etc.).
- Syntax highlighting editor with code completion.
- Execute code directly from the source editor (line, selection, or file).
- Full support for authoring Sweave and TeX documents. ¹
RStudio is available as server or desktop versions. On this cluster, the desktop version is installed.
Installed version(s)
This version is installed and currently available on environment hpc-env/6.4:
RStudio/1.2.5019-intel-2018a
Using RStudio
To use RStudio, you need to be sure to have X11 forwarding enabled. if you logg in using Linux, you just have to set the option -X on your ssh command, e.g.:
ssh abcd1234@carl.hpc.uni-oldenburg.de -X
On windows, it depends on the software you use to get a ssh connection to the cluster.
On programs like MobaXterm, you should be able to tick in the option 'X11-forwarding'
If you want to find out more about RStudio on the HPC cluster, you can use the command
module spider RStudio
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load RStudio
Always remember: this command is case sensitive!
Please have in mind, that the login nodes are just for running small scripts and for time-constrained testing purposes. Should you need to do time consuming calculations with the RStudi GUI, please create a interactive session.
Documentation
For RStudio there is a manual archive available on theyr website.
