Difference between revisions of "RSEM 2016"
Schwietzer (talk | contribs) (Created page with "== Introduction == RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, suppor...") |
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The currently installed version is '''1.3.1''' on the environment ''hpc-env/6.4''. | The currently installed version is '''1.3.1''' on the environment ''hpc-env/6.4''. | ||
== Using | == Using RSEM == | ||
If you want to find out more about RSEM on the HPC Cluster, you can use the command | If you want to find out more about RSEM on the HPC Cluster, you can use the command | ||
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module load hpc-env/6.4 | module load hpc-env/6.4 | ||
module load RSEM | module load RSEM | ||
To get an overview of the available commands after loading RSEM, type in ''rsem-'' into your console and double tap the tabulator key. | |||
Now, the autocomplete function will show you every single command starting with ''rsem-'', that is usable. | |||
== Documentation == | == Documentation == | ||
Latest revision as of 11:45, 12 October 2018
Introduction
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation.
Installed version
The currently installed version is 1.3.1 on the environment hpc-env/6.4.
Using RSEM
If you want to find out more about RSEM on the HPC Cluster, you can use the command
module spider RSEM
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version, you must load the module as well as the environment:
module load hpc-env/6.4 module load RSEM
To get an overview of the available commands after loading RSEM, type in rsem- into your console and double tap the tabulator key. Now, the autocomplete function will show you every single command starting with rsem-, that is usable.
Documentation
The full documentation about RSEM can be found in the Readme.
The developer's tutorial could be also helpful.
Further information are also available on the homepage
