Difference between revisions of "R"
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With this command the corresponding Intel compilers and Intel MPI will be automatically loaded. | With this command the corresponding Intel compilers and Intel MPI will be automatically loaded. | ||
'''Note:''' The release 2.15.2 is | '''Note:''' The release 2.15.2 is deprecated and only for legacy on the system. | ||
Revision as of 10:20, 11 June 2013
There are two R releases available on FLOW and HERO. The actual relase is available by
module load r/3.0.1
With this command the corresponding Intel compilers and Intel MPI will be automatically loaded.
Note: The release 2.15.2 is deprecated and only for legacy on the system.
Additional installed packages
The actual release contains a lot of additional R packages, for example
chron, abind, ade4, akima, bitops, caTools, circular, doMC, doMPI, ensembleBMA, foreach, gdata, geosphere, gplots, gtools, hht, iterators, lattice, latticeExtra, ncdf, raster, RColorBrewer, RCurl, signal, solaR, stringr, timeDate, truncnorm, VGAM, zoo
and many more...
Usage of R adn MPI
For parallel scripts the R contains the package Rmpi. To launch an parallel R script inside an SGE script please use command line
mpirun -bootstrap sge -np $NSLOTS -env I_MPI_FABRICS shm:ofa R SCRIPTNAME SCRIPT_CMDLINE_OPTIONS
to enable SGE to control all processes of your script.
