Difference between revisions of "Picard 2016"
Schwietzer (talk | contribs) (Created page with "== Introduction == picard is a set of Java command-line tools for manipulating high-throughput sequencing (HTS) data and formats. it is implemented using the HTSJDK Java libra...") |
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== Using picard== | == Using picard== | ||
To execute picard, you must run: java -jar $EBROOTPICARD/picard.jar | |||
If you want to find out more about picard on the HPC cluster, you can use the command | If you want to find out more about picard on the HPC cluster, you can use the command | ||
Latest revision as of 08:35, 24 April 2020
Introduction
picard is a set of Java command-line tools for manipulating high-throughput sequencing (HTS) data and formats. it is implemented using the HTSJDK Java library HTSJDK to support accessing file formats that are commonly used for high-throughput sequencing data such as SAM and VCF. ¹
It was programmed by Phoenix HPC Service of The University of Adelaide, Australia.
Installed version(s)
This version is installed and currently available...
... on environment hpc-env/8.3:
- picard/2.22.3-Java-11
- picard/2.6.0-Java-11
... on environment hpc-uniol-env:
- picard/2.9.0
Using picard
To execute picard, you must run: java -jar $EBROOTPICARD/picard.jar
If you want to find out more about picard on the HPC cluster, you can use the command
module spider picard
This will show you basic information e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load picard
Always remember: this command is case sensitive!
Documentation
The full documentation can be found here.
