Difference between revisions of "Non-public templates: Coordination of Scientific Computing"
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</nowiki> | </nowiki> | ||
== Usage of the different parallel environments == | |||
<nowiki> | |||
# (PE Name)(nJobs)(accumRuntime sec)(accumRunTime Y:D:H:M:S)(nUsers) | |||
NONE 1889850 23765160753 753:214:17:32:33 113 | |||
ansys 160 1728858 0:020:00:14:18 3 | |||
impi 15624 163695023 5:069:14:50:23 29 | |||
impi41 2597 77974431 2:172:11:33:51 16 | |||
impi41_long 46 1184370 0:013:16:59:30 1 | |||
impi_test 2 5 0:000:00:00:05 1 | |||
java 355 7618 0:000:02:06:58 1 | |||
java_job_array 89 1373 0:000:00:22:53 2 | |||
linda 72 4605247 0:053:07:14:07 3 | |||
linda_long 6 11243499 0:130:03:11:39 2 | |||
make 1 2 0:000:00:00:02 1 | |||
mdce 162 11037 0:000:03:03:57 1 | |||
mdcs 7802 39937469 1:097:05:44:29 20 | |||
molcas 224502 6460534736 204:314:16:58:56 6 | |||
molcas_cluster 586 1049253 0:012:03:27:33 1 | |||
molcas_cluster_long 1 5946 0:000:01:39:06 1 | |||
molcas_long 3 762060 0:008:19:41:00 1 | |||
molcas_smp 26 613101 0:007:02:18:21 1 | |||
mpich 13 133836 0:001:13:10:36 3 | |||
mpich2_mpd 927 4210039 0:048:17:27:19 3 | |||
mvapich 2 10 0:000:00:00:10 1 | |||
openmpi 2009 25887849 0:299:15:04:09 20 | |||
openmpi_ib 16871 294649501 9:125:07:05:01 40 | |||
openmpi_ib_long 713 66437180 2:038:22:46:20 8 | |||
smp 99320 2689147891 85:099:09:31:31 52 | |||
smp_long 44 14779112 0:171:01:18:32 12 | |||
starccmp 174 2024219 0:023:10:16:59 4 | |||
</nowiki> | |||
== List of user wiki pages == | == List of user wiki pages == | ||
Revision as of 20:00, 13 November 2013
Here, for documentation, completeness and availability I will list some templates of e-mails and further things I used on a regular basis.
Application for a new user account
So as to apply for a new user account, an eligible user needs to specify three things:
- his/her anonymous user-name in the form abcd1234,
- the working group (or ideally the unix-group) he will be associated to, and
- an approximate data until when the user account will be needed.
No university user account, yet
If the user has no university-wide anonymous user account, yet, he first needs to apply for one. An exemplary e-mail with advice on how to get such a (guest) user account is listed below
Sehr geehrter Herr NAME, um einen Nutzeraccount für das HPC System erhalten zu können müssen Sie bereits über einen universitätsweiten, anonymen Nutzeraccount verfügen. Als Gast einer Arbeitsgruppe können sie einen entsprechenden Guest-Account bei den IT-Diensten beantragen. Besuchen Sie dazu bitte die Seite http://www.uni-oldenburg.de/itdienste/services/nutzerkonto/gaeste-der-universitaet/ und wählen Sie die Option "Gastkonto einrichten". Starten sie den Workflow für das Anlegen eines Gastkontos. Tragen Sie als Verantwortlichen den Leiter der universitären Organisationseinheit ein, der Ihr Vorhaben unterstützt. Bitten Sie diesen, die E-Mail die er erhält zu öffnen, den darin enthaltenen Link aufzurufen und den Antrag zu genehmigen. Das Konto wird dann automatisch erstellt. Ihr anonymer Nutzeraccount wird die Form "abcd1234" haben. Um nun ihren Nutzeraccount für das HPC System freischalten zu können senden Sie mir bitte folgende Details: 1) den anonymen Nutzernamen für den der HPC account erstellt werden soll, 2) den Namen der Arbeitsgruppe der Sie zugeordnet werden sollen, 3) einen voraussichtlichen Gültigkeitszeitraum für den benötigten HPC account. Sobald Ihr HPC account aktiviert ist werde ich mich mit weiteren Informationen bei Ihnen melden. Mit freundlichen Grüßen Oliver Melchert
User account HPC system: Mail to IT-Services
Once the user supplied the above information, you can apply for a HPC user account at the IT-Service using an e-mail similar to:
Mail to: felix.thole@uni-oldenburg.de; juergen.weiss@uni-oldenburg.de Betreff: [HPC-HERO] Einrichtung eines Nutzeraccounts Sehr geehrter Herr Thole, sehr geehrter Herr Weiss, Hiermit bitte ich um die Einrichtung eines HPC Accounts für Herrn NAME abcd124; UNIX-GROUP der Account wird voraussichtlich bis DATUM benötigt. Mit freundlichen Grüßen Oliver Melchert
If no proper unix group exists, yet, send instead an email similar to the following:
Mail to: felix.thole@uni-oldenburg.de; juergen.weiss@uni-oldenburg.de Betreff: [HPC-HERO] Einrichtung eines Nutzeraccounts Hallo Felix, hallo Jürgen, Hiermit bitte ich um die Einrichtung eines HPC Accounts für Herrn NAME abcd1234 der Account wird voraussichtlich bis DATUM benötigt. Herr NAME ist Mitarbeiter der AG "AG-NAME" (AG-URL) von Herrn Prof. NAME AG-LEITER. Die entsprechede AG hat noch keine eigene Unix Group! Kann daher eine neue Unix Group für die AG angelegt und in die bestehende Gruppenhierarchie eingebunden werden? Ich schlage hier den Namen agUNIX-GROUP-NAME für die Unix Gruppe vor. Die AG gehört zur Fak. FAKULTAET. Mit freundlichen Grüßen Oliver Melchert
User account HPC system: Mail back to user
As soon as you get feedback from the IT-Services that the account was created, send an email to the user similar to the following:
Betreff: [HPC-HERO] HPC user account Sehr geehrter Herr NAME, die IT-Dienste haben Ihren HPC Account bereits freigeschaltet. Ihr Loginname ist abcd1234 und Sie sind der Unix-gruppe UNIX-GROUP-NAME zugeordnet. Sie verfügen über 100GB Plattenspeicher auf dem lokalen Filesystem (mit vollem Backup). Wenn Sie über einen begrenzten Zeitraum mehr Speicherplatz benötigen können Sie mich gerne diesbezüglich anschreiben. Ihren aktuellen Speicherverbrauch auf dem HPC System können Sie mittels "iquota" einsehen. An jedem Sonntag werden Sie eine Email mit dem Betreff "Your weekly HPC Quota Report" erhalten, die Ihren aktuellen Speicherverbrauch zusammenfasst. Anbei sende ich Ihnen einen Link zu unserem HPC user wiki, auf dem Sie weitere Details über das lokale HPC System erhalten http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Main_Page Der Beitrag "Brief Introduction to HPC Computing" unter http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Brief_Introduction_to_HPC_Computing illustriert einige einfache Beispiele zur Nutzung der verschiedenen (hauptsächlich parallelen) Anwendungsumgebungen die auf HERO zur Verfügung stehen und ist daher besonders zu empfehlen. Er diskutiert außerdem einige andere Themen, wie z.B. geeignetes Alloziieren von Ressourcen und Debugging. Wenn Sie planen die parallelen Ressourcen von MATLAB auf HERO zu nutzen kann ich Ihnen die Beiträge "MATLAB Distributed Computing Server" (MDCS) unter http://wiki.hpcuser.uni-oldenburg.de/index.php?title=MATLAB_Distributing_Computing_Server und "MATLAB Examples using MDCS" unter http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Matlab_Examples_using_MDCS empfehlen. Der erste Beiträge zeigt wie man das lokale Nutzerprofil für die Nutzung von MATLAB auf HERO konfigurieren kann und der Zweite beinhaltet einige Beispiele und diskutiert gelegentlich auftretende Probleme im Umgang mit MDCS. Viele Grüße Oliver Melchert
english variant of the above email:
Betreff: [HPC-HERO] HPC user account Dear NAME, the IT-Services were now able to activate your HPC account. Your login name to the HPC system is abcd1234 and you are integrated in the group UNIX-GROUP-NAME Per default you have 100GB of storage on the local filesystem which is fully backed up. If you need some more storage over a limited period in time you can contact me. Note that you can check your memory consumption on the HPC system via the command "iquota". In addition, on each Sunday you will receive an email, titled "Your weekly HPC Quota Report", summarizing your current memory usage. Below I sent you a link to the HPC user wiki where you can find further details on the HPC system http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Main_Page In particular I recommend the "Brief Introduction to HPC Computing" at http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Brief_Introduction_to_HPC_Computing which illustrates several basic examples related to different (mostly parallel) environments the HPC system HERO offers and discusses a variety of other topics, as, e.g., proper resource allocation and debugging. Further, if you plan to use the parallel capabilities of MATLAB on HERO, I recommend the "MATLAB Distributed Computing Server" (MDCS) page at http://wiki.hpcuser.uni-oldenburg.de/index.php?title=MATLAB_Distributing_Computing_Server and the "MATLAB Examples using MDCS" wiki page at http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Matlab_Examples_using_MDCS These pages summarize how to properly set up your profile for using MATLAB on HERO and discuss some of the frequently appearing problems. With kind regards Oliver
User account HPC system: Mail back to user; Fak 2 (STATA users)
New users from Fak 2 most likely want to use the STATA software. An adapted version of the above email reads
Dear MY_NAME, the IT-Services activated your HPC account already. Your login name to the HPC system is LOGIN_NAME and you are associated to the unix group UNIX_GROUP This is also reflected by the structure of the filesystem on the HCP system. Per default you have 100GB of storage on the local filesystem which is fully backed up. If you need some more storage over a limited period in time you can contact me. Note that you can check your memory consumption on the HPC system via the command "iquota". In addition, on each Sunday you will receive an email, titled "Your weekly HPC Quota Report", summarizing your current memory usage. Below I sent you a link to the HPC user wiki where you can find further details on the HPC system: http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Main_Page If you plan to use the parallel capabilities of STATA on HERO, I recommend the "STATA" entry at Main Page > Application Software and Libraries > Mathematics/Scripting > STATA see: http://wiki.hpcuser.uni-oldenburg.de/index.php?title=STATA The above page summarizes how to access the HPC System and how to successfully submit a STATA job. With kind regards Dr. Oliver Melchert
Temporary extension of disk quota
Sometimes a user from the theoretical chemistry group needs an temporary extension of the available backed-up disk space. Ask him to provide
- the total amount of disk space needed (he might check his current limit by means of the unix command iquota)
- an estimated data until the extension is required
Mail to IT-Servies
Then send an email similar to the one listed below to the IT-Service
Mail to: felix.thole@uni-oldenburg.de; juergen.weiss@uni-oldenburg.de Betreff: [HPC-HERO] Erhöhung des verfügbaren Festplattenspeichers eines Nutzers Hallo Felix, hallo Jürgen, der HPC User NAME abcd1234; UNIX-GROUP hat darum gebeten seinen Disk Quota vorübergehend zu erhöhen. Er bittet um eine Erhöhung auf ein Gesamtvolumen von 500GB die bis Ende Dezember 2013 benötigt wird. Danach kann er die Daten entsprechend archivieren und der Disk Quota könne wider zurückgesetzt werden. Viele Grüße, Oliver
List of users with nonstandard quota
Users that currently enjoy an extended disk quota:
NAME ID MEM LIMIT jan.mitschker@uni-oldenburg.de dumu7717 1TB no limit given hendrik.spieker@uni-oldenburg.de rexi0814 300GB Ende September 2013 wilke.dononelli@uni-oldenburg.de juro9204 700GB Ende Dezember 2013
Cluster downtime
In case there needs to be a maintenance downtime for the cluster, send an email similar to the following to the mailing list of the HPC users
Mail to: hpc-hero@listserv.uni-oldenburg.de Betreff: [HPC-HERO] Maintenance downtime 11-13 June 2013 (announcement) Dear Users of the HPC facilities, this is to inform you about an overly due THREE-DAY MAINTENANCE DOWNTIME FROM: Tuesday 11th June 2013, 7 am TO: Thursday 13th June 2013, 16 pm This downtime window is required for essential maintenance work regarding particular hardware components of HERO. Ultimately, the scheduled downtime will fix longstanding issues caused by malfunctioning network switches. Please note that all running Jobs will be killed if they are not finished up to 11th June 7 am. During the scheduled downtime, all queues and filesystems will be unavailable. We expect the HPC facilities to resume on Thursday afternoon. I will remind you about the upcoming three-day maintenance downtime in unregular intervals. Please accept my apologies for any inconvenience caused Oliver Melchert
In case the downtime needs to be extended send an email similar to:
Mail to: hpc-hero@listserv.uni-oldenburg.de Betreff: [HPC-HERO] Delay returning the HPC system HERO to production status Dear Users of the HPC Facilities, we currently experience a DELAY RETURNING THE hpc SYSTEM TO PRODUCTION STAUTS since the necessary change of the hardware components took longer than originally expected. The HPC facilities are expected to finally resume service by Friday 14th June 2013, 15:00 We will notify you as soon as everything is back online. With kind regards Oliver Melchert
you do not need to supply much details, yet. However, if another extension is necessary, you should provide some details otherwise prepare for complaints by the users. So, your email could look similar to:
Mail to: hpc-hero@listserv.uni-oldenburg.de Betreff: [HPC-HERO] Further delay returning the HPC system HERO to production status Dear Users of the HPC Facilities, as communicated already yesterday, we currently experience a DELAY RETURNING THE hpc SYSTEM TO PRODUCTION STATUS. The delay results from difficulties related to the maintenance work on the hardware components of HERO. The original schedule for the maintenance work could not be kept. Some details of the maintenance process are listed below: According to the IT-services, the replacement of the old (malfunctioning) network switches by IBM engineers worked out well (with no delay). However, the configuration of the components by pro-com engineers took longer that the previously estimated single day, causing the current delay. Once the configuration process is completed, the IT-service staff needs to perform several tests, firmware updates and application test which will take approximately one day. After the last step is completed, the HPC facilities will finally return to production status. In view of the above difficulties we ask for your understanding that the HPC facilities will not be up until today 15:00. We hope that the HPC facilities resume service by Monday 17th June 2013, 16:00 We will notify you as soon as everything is back online and apologize for the inconvenience. With kind regards Oliver Melchert
once the HPC is up and ready send an email similar to:
Mail to: hpc-hero@listserv.uni-oldenburg.de Betreff: [HPC-HERO] HPC systems have returned to production Dear Users of the HPC Facilities, this is to inform you that the maintenance work on the HPC systems have been completed and the HPC component HERO has returned to production: HERO accepts logins and has already started to process jobs. Thank you for your patience and please accept my apologies for the extension of the maintenance downtime and any inconvenience this might have caused Oliver Melchert
MOLCAS academic license
My question to the MOLCAS contact
Dear Dr. Veryazov, my Name is Oliver Melchert and currently I'm in charge of the coordination of the scientific computing at the University of Oldenburg. Previously this position was occupied by Reinhard Leidl who had correspondence with you. I write to you since I have a question regarding a licensed Software product which was purchased earlier for our local HPC facilities. The Software product I'm referring to is the Quantum Chemistry Software MOLCAS, for which we own an academic group license which will expire on 18.10.2013. Now, my question is, in order to extend the license validity what steps do I have to follow and can you guide me through these steps? With kind regards Dr. Oliver Melchert
And their response
Dear Dr. Melchert,
In order to update the academic license for Molcas you should place a
new order http://www.molcas.org/order.html
Please, print and sign the forms generated during the ordering.
These forms should be sent to me (e-mail attachment is OK).
After receiving the forms I will send you the updated license file.
There are two possibilities for the payment. By default - we will send
you an invoice to be paid via bank transfer.
It is also possible to pay by a credit card.
Best Regards,
Valera.
--
=================================================================
Valera Veryazov * Tel: +46-46-222 3110
Theoretical Chemistry * Fax: +46-46-222 8648
Chemical Center, *
P.O.B. 124 * Valera.Veryazov@teokem.lu.se
S-221 00 Lund, Sweden * http://www.teokem.lu.se/~valera
About MOLCAS: http://www.molcas.org/
-----------------------------------------------------------------
Large Matlab Jobs
Some Matlab users send jobs with the maximally allowed number of workers (i.e. slots in Matlab jargon), i.e. 36. Usually these Jobs get distributed over lots of hosts. E.g.:
job-ID prior name user state submit/start at queue master ja-task-ID
----------------------------------------------------------------------------------------------------------
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs004 MASTER
mpc_std_shrt.q@mpcs004 SLAVE
mpc_std_shrt.q@mpcs004 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs008 SLAVE
mpc_std_shrt.q@mpcs008 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs032 SLAVE
mpc_std_shrt.q@mpcs032 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs034 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs036 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs038 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs043 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs045 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs052 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs066 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs070 SLAVE
mpc_std_shrt.q@mpcs070 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs076 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs080 SLAVE
mpc_std_shrt.q@mpcs080 SLAVE
mpc_std_shrt.q@mpcs080 SLAVE
mpc_std_shrt.q@mpcs080 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs087 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs089 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs090 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs091 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs099 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs107 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs110 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs111 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs112 SLAVE
mpc_std_shrt.q@mpcs112 SLAVE
1040328 0.51109 Job16 nixi9106 r 10/07/2013 18:19:48 mpc_std_shrt.q@mpcs117 SLAVE
mpc_std_shrt.q@mpcs117 SLAVE
mpc_std_shrt.q@mpcs117 SLAVE
mpc_std_shrt.q@mpcs117 SLAVE
mpc_std_shrt.q@mpcs117 SLAVE
mpc_std_shrt.q@mpcs117 SLAVE
If the jobs have lots of I/O this puts a big strain on the filesystem. For these large jobs the "parallel job memory issue" is a problem. I.e. the master process has to account (in terms of memory) for all the connections to the other host machines. Then, if the master process runs out of memory the job gets killed. More common are 8 slot jobs and even more common are jobs with even less slots.
Login problems
Every now and then external guests or regular users try to login to the HPC system from outside the university and the straightforward attempt via
ssh abcd1234@hero.hpc.uni-oldenburg.de
fails, of course. Then, the user might report
Dear Oliver, My name is Pavel Paulau, I tried today for the first time to log in in cluster: ssh exwi4008@hero.hpc.uni-oldenburg.de and got message: "Permission denied, please try again." Could You say what is the reason? What should I do to get access? Thanks. Kind wishes, Pavel
A possible response then might read
Dear Pavel, on the first sight your command line statement looks right, provided that you try to login to the HPC system from a terminal within the University of Oldenburg. I also checked that your HPC account indeed exists (and it does :)). As pointed out in the HPC user wiki it makes a difference whether you attempt to login from a Terminal within the University of Oldenburg or from outside the university: http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Logging_in_to_the_system#From_within_the_University_.28intranet.29 In case you want to login to the HPC system from outside the university I recommend to setup a VPN connection via the gateway vpn2.uni-oldenburg.de as pointed out in the above user-wiki entry. However, sometimes, even though the VPN tunnel is correctly set up, the login procedure might fail due to problems resolving the hostname. Then you might try to access the cluster via the ip address of the master node. Just establish the VPN tunnel and try to access HERO via ssh exwi4008@10.140.1.61 this should resolve the name issues. With kind regards Oliver
Ranking of accumulated running times
Data accumulated from full accounting file at /cm/shared/apps/sge/6.2u5p2/default/common/:
# accumulated running time by user: # (rank)(userName)(nJobs)(accRunTime sec)(accRunTime Y:D:H:M:S) // (realName) 1 : geri2579 90754 8762221362 277:309:14:22:42 // (Christoph Norrenbrock) 2 : dumu7717 221971 5999577984 190:089:13:26:24 // (Jan Mitschker) 3 : pali6150 6795 2561650013 81:083:17:26:53 // (Timo Dewenter) 4 : kuxo7281 387622 2465015468 78:060:06:31:08 // (Christoph Echtermeyer) 5 : mujo4069 28887 2416553044 76:229:08:44:04 // (Dennis Hinrichs) 6 : juro9204 52786 1586555718 50:112:21:55:18 // (Wilke Dononelli) 7 : haft0127 6143 1502848389 47:239:01:53:09 // (Alexander Hartmann) 8 : ruxi6902 24936 1221936621 38:272:18:50:21 // (Niko Moritz) 9 : nero7893 238888 781741169 24:287:22:19:29 // (Karsten Looschen) 10 : rexi0814 7053 627322585 19:325:16:16:25 // (Hendrik Spieker) 11 : joji0479 19113 618288962 19:221:02:56:02 // (Bjoern Ahrens) 12 : zett7687 11998 600740860 19:018:00:27:40 // (Gunnar Claussen) 13 : alxo9476 246372 561958009 17:299:03:26:49 // (Oliver Melchert) 14 : mohu0982 42701 454324289 14:148:09:11:29 // (Hendrik Schawe) 15 : wane3073 47826 419461422 13:109:21:03:42 // (Pascal Fieth) 16 : mazo4669 176603 324777634 10:109:00:00:34 // (Joerg-Hendrik Bach) 17 : axex3705 145689 316742167 10:015:23:56:07 // (Bjoern Wolff) 18 : repe1429 2066 213681179 6:283:03:52:59 // (Gabriele Tomaschun) 19 : kefi1701 2548 154479289 4:327:22:54:49 // (Markus Manssen) 20 : wole2741 1404 109671463 3:174:08:17:43 // (Enno Gent) 21 : axto3490 1482 101515111 3:079:22:38:31 // (Lena Albers) 22 : gira3297 49356 92688463 2:342:18:47:43 // (Marc Rene Schaedler) 23 : axfa8508 712 80076221 2:196:19:23:41 // (Daniel Ritterskamp) 24 : mama5378 813 76950830 2:160:15:13:50 // (Erik Asplund) 25 : alpe3589 2190 73408223 2:119:15:10:23 // (Ralf Buschermoehle) 26 : alpo8118 360 68031701 2:057:09:41:41 // (Janek Greskowiak) 27 : tefi0368 522 64070458 2:011:13:20:58 // (Thomas Uwe Mueller) 28 : mapa5066 881 61950919 1:352:00:35:19 // (Muhammad Mumtaz Ahmad) 29 : hoeb8124 549 56335561 1:287:00:46:01 // (Matti Reissmann) 30 : noje7983 2017 55047182 1:272:02:53:02 // (Hamid Rahimi) 31 : bamo9780 9758 52383188 1:241:06:53:08 // (Robert Rehr) 32 : jopp2853 2250 52360926 1:241:00:42:06 // (Matthias Schramm) 33 : liro0805 60351 49192498 1:204:08:34:58 // (Christian Hinrichs) 34 : esgi3777 29098 48937263 1:201:09:41:03 // (Arne-Freerk Meyer) 35 : asju8096 7772 47230815 1:181:15:40:15 // (Hendrik Kayser) 36 : mexi8700 1378 44485489 1:149:21:04:49 // (Robert Guenther) 37 : diab3109 647 44309313 1:147:20:08:33 // (Bettina Gertjerenken) 38 : rumu5289 331 38484335 1:080:10:05:35 // (Dennis Lutters) 39 : lick1639 1593 38325087 1:078:13:51:27 // (none) 40 : teaf1672 1899 36772835 1:060:14:40:35 // (Markus Niemann) 41 : dihl9738 5007 35053168 1:040:16:59:28 // (Stefan Albensoeder) 42 : sawo0024 3610 32917355 1:015:23:42:35 // (Fabian Gieseke) 43 : tasi6754 601 30416694 0:352:01:04:54 // (Thorsten Kolling) 44 : zatu0050 986 29077086 0:336:12:58:06 // (Gerald Steinfeld) 45 : guha6809 421 27004428 0:312:13:13:48 // (Nils Burchardt) 46 : dege2737 316 26305116 0:304:10:58:36 // (Andre Schaefer) 47 : auwo0040 978 24376479 0:282:03:14:39 // (Nicole Stoffels) 48 : rehi3280 598 24030935 0:278:03:15:35 // (Patrick Zark) 49 : rawa6912 132 23203817 0:268:13:30:17 // (Rajat Karnatak) 50 : peft9847 4548 23156304 0:268:00:18:24 // (Stephan Spaeth) 51 : axar4346 1048 23057256 0:266:20:47:36 // (Wided Medjroubi) 52 : meex7858 679 22044487 0:255:03:28:07 // (Nils Andre Treiber) 53 : asto4412 154 20590474 0:238:07:34:34 // (Marcel David Fabian) 54 : dofo5522 9426 20060762 0:232:04:26:02 // (Hendrike Klein-Hennig) 55 : fupa5629 2644 20016755 0:231:16:12:35 // (Carlos Peralta) 56 : norg2515 159 19599825 0:226:20:23:45 // (Francisco Santos Alamillos) 57 : pedo3100 301 19443490 0:225:00:58:10 // (Nils Ayral) 58 : raga4343 4121 17908760 0:207:06:39:20 // (Ivan Herraez Hernandez) 59 : talu7946 1848 16004957 0:185:05:49:17 // (Elia Daniele) 60 : ergi3581 247 14169686 0:164:00:01:26 // (Jan Warfsmann) 61 : febu8581 38 13468370 0:155:21:12:50 // (Shreya Sah) 62 : hael3199 298 12721996 0:147:05:53:16 // (none) 63 : doal7591 275 12545249 0:145:04:47:29 // (Henrik Beil) 64 : adje6680 136 11221361 0:129:21:02:41 // (Olaf Bininda-Emonds) 65 : hoke3495 644 9400935 0:108:19:22:15 // (Constantin Junk) 66 : reeb1775 195462 8877633 0:102:18:00:33 // (Alexey Ryabov) 67 : muck2227 5513 8760822 0:101:09:33:42 // (Reinhard Leidl) 68 : xuhe4555 143 8722513 0:100:22:55:13 // (Florian Habecker) 69 : sobe5479 277 8073869 0:093:10:44:29 // (Mohamed Cherif) 70 : lewo8864 530 8016602 0:092:18:50:02 // (Hannes Hochstein) 71 : zaer0019 1647 7986934 0:092:10:35:34 // (none) 72 : hupe3583 200 6816092 0:078:21:21:32 // (Zacharais Njam Mokom) 73 : zugo5243 2194 6728438 0:077:21:00:38 // (Bjoern Witha) 74 : woza3934 131 6460674 0:074:18:37:54 // (Stefanie Ruehlicke) 75 : zehu1974 276 6297073 0:072:21:11:13 // (Robert Roehse) 76 : xuzu2182 208 6028628 0:069:18:37:08 // (Habib Faraz) 77 : xift8589 1329 5978239 0:069:04:37:19 // (Bintoro Anang Subagyo) 78 : moge1512 259 5958491 0:068:23:08:11 // (Alexander Buss) 79 : fewu9781 32 5556223 0:064:07:23:43 // (Jakob Raphael Spiegelberg) 80 : edfi4106 206 5123299 0:059:07:08:19 // (Wai-Leung Yim) 81 : nufa8270 212 4938852 0:057:03:54:12 // (Feifei Xiong) 82 : kuli5479 97 4799076 0:055:13:04:36 // (Vincent Hess) 83 : paxu8307 201 4731926 0:054:18:25:26 // (Martin Doerenkaemper) 84 : adto6352 54 4530062 0:052:10:21:02 // (Christian Lasar) 85 : jolo0127 82 4340981 0:050:05:49:41 // (Angela Josupeit) 86 : lozi7895 4173 4268724 0:049:09:45:24 // (Felix Thole) 87 : buza0896 482 4094419 0:047:09:20:19 // (Iko Pieper) 88 : beex6806 305 3980809 0:046:01:46:49 // (Sebastian Grashorn) 89 : jurf9330 133 3944954 0:045:15:49:14 // (Frederik Haack) 90 : juad6850 70 3632885 0:042:01:08:05 // (Bernhard Stoevesandt) 91 : tugt2159 698 3393637 0:039:06:40:37 // (none) 92 : fesi4140 232 3317465 0:038:09:31:05 // (Lueder von Bremen) 93 : arbu5607 375 3313414 0:038:08:23:34 // (none) 94 : beau4118 57 3263987 0:037:18:39:47 // (Crispin Reinhold) 95 : zana6011 459 3219100 0:037:06:11:40 // (Davide Trabucchi) 96 : seho2708 258 3209773 0:037:03:36:13 // (Bastian Dose) 97 : pord4261 46 3186136 0:036:21:02:16 // (Nils Kirrkamm) 98 : elbi1717 163 2873124 0:033:06:05:24 // (Chai Heng Lim) 99 : sidu8566 221 2828467 0:032:17:41:07 // (none) 100: abgu0243 42 2536063 0:029:08:27:43 // (Thorsten Kluener) 101: sino6087 330 2483522 0:028:17:52:02 // (Valeria Angelino) 102: esas0656 2720 2375967 0:027:11:59:27 // (Hauke Beck) 103: penu5836 118 2252853 0:026:01:47:33 // (none) 104: rael0338 25 2173884 0:025:03:51:24 // (Florian Loose) 105: eddo9274 231 2031643 0:023:12:20:43 // (Karsten Lettmann) 106: gusu8312 2709 2000390 0:023:03:39:50 // (Elisabeth Stuetz) 107: weaf4518 117 1960521 0:022:16:35:21 // (Daniel Ahlers) 108: xaed4158 60 1877839 0:021:17:37:19 // (Lukas Halekotte) 109: tode0315 705 1708668 0:019:18:37:48 // (none) 110: xuer9386 72 1654003 0:019:03:26:43 // (Hugues Ambroise) 111: xojo9092 23 1566894 0:018:03:14:54 // (Kajari Bera) 112: muxu6688 1222 1405291 0:016:06:21:31 // (Robert Schadek) 113: wuge3108 46 1224412 0:014:04:06:52 // (none) 114: gare6232 45 1177848 0:013:15:10:48 // (Michael Schwarz) 115: zuka9781 25 1126226 0:013:00:50:26 // (none) 116: auzu2321 130 887319 0:010:06:28:39 // (Liudmila Moskaleva) 117: fewo4259 83 812040 0:009:09:34:00 // (Julia Schloen) 118: naji9738 17 803827 0:009:07:17:07 // (Henning Grossekappenberg) 119: kasu8272 815 787089 0:009:02:38:09 // (Benjamin Wahl) 120: sona3432 4 762062 0:008:19:41:02 // (Marie Arndt) 121: bofe5314 137 747591 0:008:15:39:51 // (Terno Ohsawa) 122: dael3266 44 628808 0:007:06:40:08 // (none) 123: boch5350 4447 475622 0:005:12:07:02 // (hpc-Clonebusters) 124: foxu9815 35 447902 0:005:04:25:02 // (Sonja Drueke) 125: pedi6862 37 447610 0:005:04:20:10 // (Jose-Placido Parra Viol) 126: kano8824 449 395237 0:004:13:47:17 // (none) 127: leck7200 13 235605 0:002:17:26:45 // (Francisco Toja-Silva) 128: gise4802 25 217621 0:002:12:27:01 // (Maria Tschikin) 129: gepp0026 63 206307 0:002:09:18:27 // (Jan Vogelsang) 130: tezi2895 73 177902 0:002:01:25:02 // (none) 131: nixi9106 18 175225 0:002:00:40:25 // (Henning Schepker) 132: lulo2927 102 152011 0:001:18:13:31 // (Lukas Vollmer) 133: gaha8290 3 126961 0:001:11:16:01 // (Ksenia Guseva) 134: ralo6199 107 110025 0:001:06:33:45 // (Hugues Ambroise) 135: nine4710 12 101010 0:001:04:03:30 // (Rainer Koch) 136: limo1478 53766 94097 0:001:02:08:17 // (Maxim Klimenko) 137: kisa9270 15 69213 0:000:19:13:33 // (Murali Sukumaran) 138: fupu4553 4 51252 0:000:14:14:12 // (Vasken Ketchedjian) 139: jihu5122 488 30033 0:000:08:20:33 // (Marc Bromm) 140: bogo2286 40 29448 0:000:08:10:48 // (Timo Gerkmann) 141: zurn7015 21 23579 0:000:06:32:59 // (Heidelinde Roeder) 142: daes8547 151 21065 0:000:05:51:05 // (Stefan Rach) 143: lodu8387 14 11941 0:000:03:19:01 // (Anna Vanselow) 144: auko1937 6 10623 0:000:02:57:03 // (Eike Mayland-Quellhorst) 145: medi4340 2 8543 0:000:02:22:23 // (Vanessa Schakau) 146: guxa1456 38 7023 0:000:01:57:03 // (Derya Dalga) 147: kode4290 8 3842 0:000:01:04:02 // (Martin Klein-Hennig) 148: lega0306 1 2893 0:000:00:48:13 // (Thomas Breckel) 149: feze2916 21 2705 0:000:00:45:05 // (Martin Reiche) 150: zeas7445 52 2301 0:000:00:38:21 // (Ina Kodrasi) 151: joho0429 16 2033 0:000:00:33:53 // (Ante Jukic) 152: fiwi0088 20 1702 0:000:00:28:22 // (Dorothee Hodapp) 153: sott5485 42 1354 0:000:00:22:34 // (none) 154: argu7102 6 1089 0:000:00:18:09 // (hpc-guest001) 155: fime4215 8 530 0:000:00:08:50 // (Hauke Wurps) 156: gaje2471 2 501 0:000:00:08:21 // (Jochem Rieger) 157: giku5867 2 303 0:000:00:05:03 // (Philipp Kraemer) 158: kako0048 2 291 0:000:00:04:51 // (Thomas Greve) 159: mimo4729 8 284 0:000:00:04:44 // (Benjamin Cauchi) 160: garu0840 4 198 0:000:00:03:18 // (Angelina Paulmann) 161: root 29 165 0:000:00:02:45 // (root) 162: teer6901 1 147 0:000:00:02:27 // (Rainer Beutelmann) 163: tund5075 6 127 0:000:00:02:07 // (Juergen Weiss) 164: beba2086 1 111 0:000:00:01:51 // (Maria Wieckhusen) 165: merd1369 3 74 0:000:00:01:14 // (hpc-guest012) 166: esfu4434 4 26 0:000:00:00:26 // (Reemda Jaeschke) 167: nusi9376 1 11 0:000:00:00:11 // (Thomas Kaspereit) 168: xonu1606 5 3 0:000:00:00:03 // (Christoph Gerken) 169: pebu4515 8 2 0:000:00:00:02 // (Nikolaos Fytas) 170: nime9670 3 0 0:000:00:00:00 // (Chandan Kumar) 171: fide6340 1 0 0:000:00:00:00 // (Carsten Engelberts) # accumulated running time by ag: # (rank)(agName)(accRunTime sec)(accRunTime Y:D:H:M:S)(nUsers) 0 : agcompphys 16448685039 521:213:07:10:39 14 1 : agtheochem 8774834718 278:090:14:05:18 23 2 : agmodelling 2553971024 80:359:20:23:44 4 3 : agcondmat 2461079978 78:014:17:19:38 3 4 : agmediphys 1739915619 55:062:21:53:39 7 5 : fw 418542668 13:099:05:51:08 36 6 : agcompint 371704009 11:287:03:06:49 3 7 : agmolchem 321270004 10:068:09:40:04 9 8 : iwes 92596585 2:341:17:16:25 6 9 : agses 73408223 2:119:15:10:23 1 10 : aghydrogeo 72830777 2:112:22:46:17 2 11 : agsigproc 57538354 1:300:22:52:34 8 12 : agenvinf 49192498 1:204:08:34:58 1 13 : agstatphys 36772835 1:060:14:40:35 1 14 : agcomplexsys 23354357 0:270:07:19:17 3 15 : hrz 13029673 0:150:19:21:13 3 16 : agphysocean 11595939 0:134:05:05:39 7 17 : agsystematics 11221361 0:129:21:02:41 1 18 : agcompchem 6128714 0:070:22:25:14 3 19 : agfieldtheo 5978239 0:069:04:37:19 1 20 : agcoordchem 2173884 0:025:03:51:24 1 21 : arv 1654003 0:019:03:26:43 1 22 : agdistsys 1405291 0:016:06:21:31 1 23 : agsofteng 569722 0:006:14:15:22 3 24 : agnanoopt 206307 0:002:09:18:27 1 25 : aggeneralpsych 21065 0:000:05:51:05 1 26 : agplantbiodiv 10623 0:000:02:57:03 1 27 : agbiopsych 2893 0:000:00:48:13 2 28 : agpsychdh 2705 0:000:00:45:05 1 29 : hpcguest 1163 0:000:00:19:23 2 30 : agancp 501 0:000:00:08:21 1 31 : aganimalbiodiv 303 0:000:00:05:03 1 32 : 165 0:000:00:02:45 1 33 : agzoophys 147 0:000:00:02:27 1 34 : agaccounting 37 0:000:00:00:37 2 35 : agmediainf 0 0:000:00:00:00 1
Usage of the different parallel environments
# (PE Name)(nJobs)(accumRuntime sec)(accumRunTime Y:D:H:M:S)(nUsers) NONE 1889850 23765160753 753:214:17:32:33 113 ansys 160 1728858 0:020:00:14:18 3 impi 15624 163695023 5:069:14:50:23 29 impi41 2597 77974431 2:172:11:33:51 16 impi41_long 46 1184370 0:013:16:59:30 1 impi_test 2 5 0:000:00:00:05 1 java 355 7618 0:000:02:06:58 1 java_job_array 89 1373 0:000:00:22:53 2 linda 72 4605247 0:053:07:14:07 3 linda_long 6 11243499 0:130:03:11:39 2 make 1 2 0:000:00:00:02 1 mdce 162 11037 0:000:03:03:57 1 mdcs 7802 39937469 1:097:05:44:29 20 molcas 224502 6460534736 204:314:16:58:56 6 molcas_cluster 586 1049253 0:012:03:27:33 1 molcas_cluster_long 1 5946 0:000:01:39:06 1 molcas_long 3 762060 0:008:19:41:00 1 molcas_smp 26 613101 0:007:02:18:21 1 mpich 13 133836 0:001:13:10:36 3 mpich2_mpd 927 4210039 0:048:17:27:19 3 mvapich 2 10 0:000:00:00:10 1 openmpi 2009 25887849 0:299:15:04:09 20 openmpi_ib 16871 294649501 9:125:07:05:01 40 openmpi_ib_long 713 66437180 2:038:22:46:20 8 smp 99320 2689147891 85:099:09:31:31 52 smp_long 44 14779112 0:171:01:18:32 12 starccmp 174 2024219 0:023:10:16:59 4
List of user wiki pages
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Brief_Introduction_to_HPC_Computing
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Matlab_Examples_using_MDCS
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Queues_and_resource_allocation
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Unix_groups
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Mounting_Directories_of_FLOW_and_HERO#OSX
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=File_system (Snapshot functionality)
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=STATA
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Memory_Overestimation
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Debugging
http://wiki.hpcuser.uni-oldenburg.de/index.php?title=Profiling_using_gprof
