Difference between revisions of "Medaka 2016"
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== Documentation == | == Documentation == | ||
The full documentation can be found [ here]. | The full documentation can be found [https://nanoporetech.github.io/medaka/ here]. | ||
Revision as of 11:10, 21 October 2019
Introduction
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive with state-of-the-art signal-based methods, whilst being much faster¹.
Installed version(s)
This version is installed and currently available on environment hpc-env/6.4:
medaka/0.9.2-foss-2017b-Python-3.6.3
Using medaka
If you want to find out more about medaka on the HPC cluster, you can use the command
module spider medaka
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load medaka
Always remember: this command is case sensitive!
To get a short description on how to use the medaka command, you can use the help function:
medaka --help
Documentation
The full documentation can be found here.
