Ipyrad

Introduction

The software ipyrad is an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies. [1]

At the moment, there is no central installation of ipyrad, however, you can easily install it yourself using Anaconda3 as described below.

Installation

To install ipyrad you first need to load a module for Anaconda3. In this example, we use Anaconda3/2020.02 which can be found in hpc-env/8.3 (if you want to use a different version/environment you can search with module av Anaconda3 or module spider Anaconda3):

[carl]$ module load hpc-env/8.3
[carl]$ module load Anaconda/2020.02