Difference between revisions of "Ipyrad"
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At the moment, there is no central installation of <tt>ipyrad</tt>, however, you can easily install it yourself using [[Anaconda 2016|<tt>Anaconda3</tt>]] as described below. | At the moment, there is no central installation of <tt>ipyrad</tt>, however, you can easily install it yourself using [[Anaconda 2016|<tt>Anaconda3</tt>]] as described below. | ||
== Installation == | |||
To install <tt>ipyrad</tt> you first need to load a module for [[Anaconda 2016|<tt>Anaconda3</tt>]]. In this example, we use <tt>Anaconda3/2020.02</tt> which can be found in <tt>hpc-env/8.3</tt> (if you want to use a different version/environment you can search with <tt>module av Anaconda3</tt> or <tt>module spider Anaconda3</tt>): | |||
[carl]$ module load hpc-env/8.3 | |||
[carl]$ module load Anaconda/2020.02 | |||
Revision as of 13:13, 15 June 2020
Introduction
The software ipyrad is an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies. [1]
At the moment, there is no central installation of ipyrad, however, you can easily install it yourself using Anaconda3 as described below.
Installation
To install ipyrad you first need to load a module for Anaconda3. In this example, we use Anaconda3/2020.02 which can be found in hpc-env/8.3 (if you want to use a different version/environment you can search with module av Anaconda3 or module spider Anaconda3):
[carl]$ module load hpc-env/8.3 [carl]$ module load Anaconda/2020.02
