Installing RPackages as Bundle

RPackage extensions

The list of extensions for R is already quite large by default, so adding more extension might not always be a good idea and difficult to maintain. Instead, creating a bundle-Easyconfig with an extension list could be a better solution. This is also required if an RPackage has an additional dependency, e.g. for pdftools you need the module poppler (see below). Also, if several extensions belonging together are requested by a user (see ticket 20200629-0179) than an Easyconfig serves as a documentation and the same setup can be provided for another R version easily.

easyblock = 'Bundle'

name = 'quanteda'
version = '2.1.0'
versionsuffix = '-R-%(rver)s'

homepage = 'http://quanteda.io'
description = "An R package for managing and analyzing text."

toolchain = {'name': 'foss', 'version': '2019b'}

dependencies = [
    ('R', '4.0.2'),
    ('poppler', '0.90.0'),
]

exts_defaultclass = 'RPackage'

exts_default_options = {
    'source_urls': [
        'https://cran.r-project.org/src/contrib/Archive/%(name)s',  # package archive
        'https://cran.r-project.org/src/contrib/',  # current version of packages
        'https://cran.freestatistics.org/src/contrib',  # mirror alternative for current packages
    ],
    'source_tmpl': '%(name)s_%(version)s.tar.gz',
}

exts_filter = ("R -q --no-save", "library(%(ext_name)s)")

exts_list = [
    ('RcppParallel', '5.0.2', {
        'checksums': ['8ca200908c6365aafb2063be1789f0894969adc03c0f523c6cc45434b8236f81'],
    }),
    ('proxyC', '0.1.5', {
        'checksums': ['e63dc4f20d16c27404cc5aad5b6f0478c7b1e347cc25988735156ad205612b95'],
    }),
    (name, version, {
        'checksums': ['877504c7b075396fd1d2fe1377d5f538bbc9b17c292c24290b0d64f3caa9bb63'],
    }),
    ('LiblineaR', '2.10-8', {
        'checksums': ['0f81a93bb954d71fc65c6487da581423b7053722e97544fb1260c7c3d457d39f'],
    }),
    ('RSpectra', '0.16-0', {
        'checksums': ['aaf1cfc9ffe3a4c6684247899924e1c18306971dfef4bae1dc596a2fb42a64a9'],
    }),
    ('RSSL', '0.9.1', {
        'checksums': ['2841483cd7f890737ff79839d222552c2e796cab2848f63aea11a469e7578520'],
    }),
    ('quanteda.textmodels', '0.9.1', {
        'checksums': ['d64e72f4eb7c43008c8b8b7e7ee8b9d18b26b1065c05a043a806746f261c8411'],
    }),
    ('antiword', '1.3', {
        'checksums': ['d248f8117c8b96ee56459eb08c078295aca5c72ee78f1ce2438bf3f4c0b29f0c'],
    }),
    ('qpdf', '1.1', {
        'checksums': ['71f106925aeffcf3cae500aad5f9306b64a9ed963540ec1d77a161c49975960e'],
    }),
    ('pdftools', '2.3.1', {
        'checksums': ['5d373b46acc226f7dfe41f0617876d84fe394fdc999e4a3fd011ea29ab782506'],
    }),
    ('readODS', '1.6.7', {
        'checksums': ['41f9c05c906673d044ec4f1156a5d82fc34002797d29b14b68879a38b68473db'],
    }),
    ('ndjson', '0.8.0', {
        'checksums': ['22a037dbad0ae17e0ac442f45370fa7b4c4cc23f66ef1a949fe4e910dd5b7f53'],
    }),
    ('streamR', '0.4.5', {
        'checksums': ['3d1e496b387802c0f21f1b6f29fac0a4d8c2f189d3505b6dc8251421c11a9db2'],
    }),
    ('striprtf', '0.5.2', {
        'checksums': ['8df187eafaa80c12317e3be3a7b4fe20ac4a89d0e91b21756ee645aaa85246e5'],
    }),
    ('readtext', '0.76', {
        'checksums': ['92d3335b7b19cd1cc8298615e28fb0174c6ef9410d3351567b2578a5c46ae9cc'],
    }),
    ('tau', '0.0-21', {
        'checksums': ['a7fbd884eba0c49feb72c1c8614d70e65038781eebd7bfd9a5ac18b42fa08e23'],
    }),
    ('RTextTools', '1.4.3', {
        'checksums': ['ffd34254d07a2aad27d8dd5cfd877b3fc9ffa94771fd8e6c36609ac170dcb23b'],
    }),
    ('udpipe', '0.8.3', {
        'checksums': ['60b1cfefcb7406825bfc352c002a8c84c56dda565253713e997d40008ed644fb'],
    }),
    ('irr', '0.84.1', {
        'checksums': ['e7bae8476b723a2246564c013194e8b7fcc9b34affc0ab5fcd55875231f544c3'],
    }),
    ('KernelKnn', '1.1.0', {
        'checksums': ['172c99d71bfd07db018053051952a22cbaa806592df7284e9f00ae82c52213f1'],
    }),
    ('dbscan', '1.1-5', {
        'checksums': ['135eebfff327631e4e4b98119405e3550d096b882578f64b39425955ab4d02ee'],
    }),
    ('smotefamily', '1.3.1', {
        'checksums': ['978d99afaf1bfe51d1752f652298a5e2e1fde2f667e10f8373dee2158ebe5e18'],
    }),
    ('Cubist', '0.2.3', {
        'checksums': ['19845f585e073f316bb4bdf74b28a624e839561faeedd40ef5548960c5b1e1f4'],
    }),
    ('C50', '0.1.3.1', {
        'checksums': ['0b151ba8deef50ab2e2ad8469d87f54f0c6ab862f5c790ed8bb16cb3b8027546'],
    }),
    ('imbalance', '1.0.2.1', {
        'checksums': ['3a44ee386faac9a08d09f9e8df48689aa9d635e1e35aefb40a0b0584fab8c791'],
    }),
]

sanity_check_paths = {
    'files': [],
    'dirs': [name],
}

modextrapaths = {'R_LIBS': ''}

moduleclass = 'math'