Difference between revisions of "Installing NextGenMap"
From HPC users
Jump to navigationJump to search
Schwietzer (talk | contribs) (Created page with "NextGenMap builds its own dependencies (zlib, bamtools, etc.), but after copying from %(build)s to %(installdir)s,they wo't get recognized anymore. So the workaround has been,...") |
Schwietzer (talk | contribs) |
||
| Line 1: | Line 1: | ||
NextGenMap builds its own dependencies (zlib, bamtools, etc.), but after copying from %(build)s to %(installdir)s,they wo't get recognized anymore. | NextGenMap builds its own dependencies (zlib, bamtools, etc.), but after copying from %(build)s to %(installdir)s,they wo't get recognized anymore. | ||
So the workaround has been, to copy the lua file (or to create it) and to build it directly at the software environment. | So the workaround has been, to copy the lua file (or to create it) and to build it directly at the software environment. | ||
Please note, that the bin folder has a subdirectory, so $PATH has to be set accordingly | Please note, that the bin folder has a subdirectory, so $PATH has to be set accordingly. <br/> | ||
Finally, the permissions have to be set right: | |||
chmod 755 %(installdir)s/bin/ngm-0.5.5/* | |||
Latest revision as of 11:21, 22 November 2019
NextGenMap builds its own dependencies (zlib, bamtools, etc.), but after copying from %(build)s to %(installdir)s,they wo't get recognized anymore.
So the workaround has been, to copy the lua file (or to create it) and to build it directly at the software environment.
Please note, that the bin folder has a subdirectory, so $PATH has to be set accordingly.
Finally, the permissions have to be set right:
chmod 755 %(installdir)s/bin/ngm-0.5.5/*
