Difference between revisions of "Installed Application Software and Libraries"

From HPC users
Jump to navigationJump to search
Line 1: Line 1:
== Introduction ==
== Introduction ==


This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week.  
This page was created to give you an overview of the installed software (format: name/version) on the cluster. The list will be updated at least once per week.  


===/cm/local/modulefiles===
===/cm/local/modulefiles===

Revision as of 16:08, 27 March 2017

Introduction

This page was created to give you an overview of the installed software (format: name/version) on the cluster. The list will be updated at least once per week.

/cm/local/modulefiles

  • cluster-tools/7.3
  • cmd
  • dot
  • freeipmi/1.5.2
  • gcc/6.1.0
  • ipmitool/1.8.17
  • module-git
  • module-info
  • openldap
  • shared

/cm/shared/uniol/modules/core

  • hpc-uniol-env (L)
  • slurm/current (L)

/cm/shared/uniol/modules/bio

  • BCFtools/1.3.1
  • bcl2fastq2/2.18.0.12
  • BEDTools/2.26.0
  • BLAST/2.2.26
  • BLAST/2.6.0 (D)
  • BLAT/3.5
  • BamTools/2.4.0
  • Beast/2.4.5
  • BioPerl/1.7.0
  • Biopython/1.68
  • Bowtie/1.1.2
  • Bowtie2/2.2.9
  • bwa.kit/0.7.12
  • CD-HIT/4.6.4
  • cutadapt/1.9.1
  • FASTX-Toolkit/0.0.14
  • FastQC/0.11.5
  • IGV/2.3.80
  • IGVTools/2.3.75
  • Lighter/1.0
  • Lumpy/0.1
  • NextGenMap/0.5.2
  • SAMtools/1.3.1
  • SOAPdenovo2/r240
  • Stacks/1.42
  • Trinity/2.2.0
  • VCFtools/0.1.14
  • ViennaRNA/2.3.1

/cm/shared/uniol/modules/cfd

  • ESMF/7.0.0
  • GMT/5.3.1
  • OpenFOAM/1.7.1
  • OpenFOAM/2.1.1
  • OpenFOAM/2.3.1
  • OpenFOAM/2.4.0
  • OpenFOAM/3.0.1
  • OpenFOAM/4.0
  • OpenFOAM/4.1-gcc
  • OpenFOAM/4.1-se
  • OpenFOAM/4.1 (D)
  • OpenFOAM-Extend/3.2
  • PALMDependencies/all
  • ThetaDependencies/all
  • WPS/3.6.1
  • WPS/3.7.1
  • WPS/3.8.0
  • WPS/3.8.1 (D)
  • WRF/3.6.1
  • WRF/3.7.1
  • WRF/3.8.0
  • WRF/3.8.1 (D)
  • WRFGeodata/all
  • WRFGeodata/3.8 (D)

/cm/shared/uniol/modules/chem

  • CP2K/3.0
  • ORCA/3.0.3
  • ORCA/4.0.0 (D)
  • PLUMED/2.2.3
  • gaussian/g09.b01
  • gaussian/g09.d01 (D)

/cm/shared/uniol/modules/compiler

  • CUDA-Toolkit/8.0.44
  • GCC/4.9.4-2.25
  • GCC/5.4.0-2.26
  • GCC/6.2.0-2.27 (D)
  • LLVM/3.8.1-goolf-5.2.01
  • LLVM/3.8.1-intel-2016b
  • LLVM/3.9.0-intel-2016b (D)
  • NAG_Fortran/5.2
  • PGI/12.10
  • PGI/15.10
  • PGI/16.10 (D)
  • icc/2016.3.210
  • ifort/2016.3.210

/cm/shared/uniol/modules/data

  • CDO/1.7.2-intel-2016b
  • HDF/4.2.11-intel-2016b
  • HDF5/1.8.17-intel-2016b
  • NCL/6.3.0-intel-2016b
  • g2clib/1.4.0-intel-2016b
  • g2lib/1.4.0-intel-2016b
  • grib_api/1.16.0-intel-2016b
  • netCDF/4.4.1-intel-2016b
  • netCDF-Fortran/4.4.4-intel-2016b

/cm/shared/uniol/modules/devel

  • Autotools/20150215
  • Boost/1.61.0-goolf-5.2.01
  • Boost/1.61.0-intel-2016b (D)
  • CMake/2.8.12
  • CMake/3.6.2 (D)
  • CUDA-Profiler/8.0.44
  • CUDA-Visual-Profiler/8.0.44
  • Cube/4.3.4
  • M4/1.4.17
  • ncurses/6.0
  • Nvidia-Tesla-GDK/352.79
  • OTF2/2.0
  • Qt/4.8.7-goolf-5.2.01
  • SQLite/3.9.2-intel-2016b
  • SQLite/3.13.0-goolf-5.2.01
  • SQLite/3.13.0-intel-2016b (D)
  • Scalasca/2.3
  • Valgrind/3.12.0
  • xbitmaps/1.1.1
  • xorg-macros/1.19.0

/cm/shared/uniol/modules/lang

  • Anaconda3/4.3.0
  • Bison/3.0.4
  • Gurobi/7.0.2
  • Java/8.112
  • nodejs/4.4.7-intel-2016b
  • Perl/5.20.3
  • Python/2.7.11-intel-2016b
  • Python/2.7.12
  • Python/3.5.2 (D)
  • R/3.3.1
  • ScientificPython/2.9.4-Python-2.7.12 (D)
  • Tcl/8.6.4-intel-2016b
  • Yasm/1.3.0

/cm/shared/uniol/modules/lib

  • CFITSIO/3.410
  • CUDA-Blas/8.0.44
  • CUDA-FFT/8.0.44
  • libtool/2.4.6
  • libpng/1.6.24
  • libxml2/2.9.4
  • path.py/8.2.1-intel-2016b-Python-3.5.2
  • SIONlib/1.6.1
  • testpath/0.3-intel-2016b-Python-3.5.2
  • Xerces-C++/3.1.3
  • xforms/1.2.4
  • zlib/1.2.8
  • zoltan/3.83

/cm/shared/uniol/modules/math

  • GMP/6.1.0-intel-2016b

/cm/shared/uniol/modules/mpi

  • OpenMPI/1.10.4-GCC-4.9.4
  • OpenMPI/2.0.1-GCC-5.4.0
  • OpenMPI/2.0.1-GCC-6.2.0
  • OpenMPI/2.0.2-GCC-5.4.0-2.26 (D)
  • impi/5.1.3.210

/cm/shared/uniol/modules/numlib

  • ATLAS/3.10.2
  • Armadillo/7.500.1
  • cuDNN/5.1-CUDA-8.0.44
  • Eigen/3.2.9
  • FFTW/3.3.5-gompi-5.2.01
  • FIAT/1.6.0-intel-2016b-Python-2.7.12
  • GMP/6.1.1 (D)
  • GSL/2.1
  • Hypre/2.11.1
  • imkl/11.3.3.210
  • leda/6.3
  • LinBox/1.4.0
  • maple/18
  • MATLAB/2016b
  • maple/2016 (D)
  • MPFR/3.1.4
  • NTL/9.8.1
  • Octave/4.0.3
  • OpenBLAS/0.2.19
  • Qhull/2015.2
  • ScaLAPACK/2.0.2
  • SuiteSparse/4.5.3
  • stata/13

/cm/shared/uniol/modules/phys

  • EGSnrc/2017
  • Geant4/9.6.p04-intel-2016b
  • Geant4/9.6.p04
  • Geant4/10.02.p01 (D)
  • fluka/2011.2c

/cm/shared/uniol/modules/toolchain

  • foss/2016b
  • gompi/4.1.10
  • gompi/5.2.01
  • gompi/6.2.01 (D)
  • goolf/5.2.01
  • iimpi/2013b
  • iimpi/2016b (D)
  • intel/2013b
  • intel/2016b (D)

/cm/shared/uniol/modules/tools

  • EasyBuild/3.0.0
  • Ghostscript/9.19-intel-2016b
  • NCO/4.6.0-intel-2016b
  • XZ/5.2.2-intel-2016b
  • configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7
  • tree/1.7.0
  • util-linux/2.29-intel-2016b

/cm/shared/uniol/modules/vis

  • FFmpeg/3.1.3-intel-2016b
  • GraphicsMagick/1.3.25-intel-2016b
  • OpenCV/3.1.0-intel-2016b
  • ParaView/5.1.2-goolf-5.2.01-mpi
  • ParaView/5.1.2-intel-2016b-mpi (D)
  • Tk/8.6.4-intel-2016b-no-X11
  • UDUNITS/2.2.20-intel-2016b
  • gettext/0.19.8
  • gnuplot/5.0.5-intel-2016b
  • grace/5.1.25
  • libX11/1.6.3-intel-2016b
  • motif/2.3.6
  • ncview/2.1.7-intel-2016b


The list above was created with the command: 

module avail

and will is not showing the hidden modules.

If you want to create a list of every available software on the cluster (even the hidden ones), on your own, you can do this by simply using the command: 

module spider

The available software is listed in the format: name, version

Retrieved from "https://wiki.hpcuser.uni-oldenburg.de/index.php?title=Installed_Application_Software_and_Libraries&oldid=3345"