Installed Application Software and Libraries

Introduction

This page was created to give you an overview of the installed software on the cluster. The list will be updated once per week.

The available software is listed in the format: name, version

• ATLAS/3.10.2
• Anaconda3/4.3.0
• Armadillo/7.500.1
• Autotools/20150215
• BCFtools/1.3.1
• BEDTools/2.26.0
• BLAST/2.2.26
• BLAST/2.6.0
• BLAT/3.5
• BamTools/2.4.0
• Beast/2.4.5
• BioPerl/1.7.0
• Biopython/1.68
• Bison/3.0.4
• Boost/1.61.0-goolf-5.2.01
• Boost/1.61.0-intel-2016b
• Bowtie/1.1.2
• Bowtie2/2.2.9
• CD-HIT/4.6.4
• CDO/1.7.2-intel-2016b
• CFITSIO/3.410
• CMake/2.8.12
• CMake/3.6.2
• CP2K/

CP2K/3.0 CUDA-Blas/ CUDA-Blas/8.0.44 CUDA-FFT/ CUDA-FFT/8.0.44 CUDA-Profiler/ CUDA-Profiler/8.0.44 CUDA-Toolkit/ CUDA-Toolkit/8.0.44 CUDA-Visual-Profiler/ CUDA-Visual-Profiler/8.0.44 Cube/ Cube/4.3.4 EGSnrc/ EGSnrc/2017 ESMF/ ESMF/7.0.0 EasyBuild/ EasyBuild/3.0.0 Eigen/ Eigen/3.2.9 FASTX-Toolkit/ FASTX-Toolkit/0.0.14 FFTW/ FFTW/3.3.5-gompi-5.2.01 FFmpeg/ FFmpeg/3.1.3-intel-2016b FIAT/ FIAT/1.6.0-intel-2016b-Python-2.7.12 FastQC/ FastQC/0.11.5 GCC/ GCC/4.9.4-2.25 GCC/5.4.0-2.26 GCC/6.2.0-2.27 GMP/ GMP/6.1.0-intel-2016b GMP/6.1.1 GMT/ GMT/5.3.1 GSL/ GSL/2.1 Geant4/ Geant4/9.6.p04-intel-2016b Geant4/9.6.p04 Geant4/10.02.p01 Ghostscript/ Ghostscript/9.19-intel-2016b GraphicsMagick/ GraphicsMagick/1.3.25-intel-2016b Gurobi/ Gurobi/7.0.2 HDF/ HDF/4.2.11-intel-2016b HDF5/ HDF5/1.8.17-intel-2016b Hypre/ Hypre/2.11.1 IGV/ IGV/2.3.80 IGVTools/ IGVTools/2.3.75 Java/ Java/8.112 LLVM/ LLVM/3.8.1-goolf-5.2.01 LLVM/3.8.1-intel-2016b LLVM/3.9.0-intel-2016b Lighter/ Lighter/1.0 LinBox/ LinBox/1.4.0 Lumpy/ Lumpy/0.1 M4/ M4/1.4.17 MATLAB/ MATLAB/2016b MPFR/ MPFR/3.1.4 NAG_Fortran/ NAG_Fortran/5.2 NCL/ NCL/6.3.0-intel-2016b NCO/ NCO/4.6.0-intel-2016b NTL/ NTL/9.8.1 NextGenMap/ NextGenMap/0.5.2 Nvidia-Tesla-GDK/ Nvidia-Tesla-GDK/352.79 ORCA/ ORCA/3.0.3 ORCA/4.0.0 OTF2/ OTF2/2.0 Octave/ Octave/4.0.3 OpenBLAS/ OpenBLAS/0.2.19 OpenCV/ OpenCV/3.1.0-intel-2016b OpenFOAM/ OpenFOAM-Extend/ OpenFOAM-Extend/3.2 OpenFOAM/1.7.1 OpenFOAM/2.1.1 OpenFOAM/2.3.1 OpenFOAM/2.4.0 OpenFOAM/3.0.1 OpenFOAM/4.0 OpenFOAM/4.1-gcc OpenFOAM/4.1-se OpenFOAM/4.1 OpenMPI/ OpenMPI/1.10.4-GCC-4.9.4 OpenMPI/2.0.1-GCC-5.4.0 OpenMPI/2.0.1-GCC-6.2.0 OpenMPI/2.0.2-GCC-5.4.0-2.26 PALMDependencies/ PALMDependencies/all PGI/ PGI/12.10 PGI/15.10 PGI/16.10 PLUMED/ PLUMED/2.2.3 ParaView/ ParaView/5.1.2-goolf-5.2.01-mpi ParaView/5.1.2-intel-2016b-mpi Perl/ Perl/5.20.3 Python/ Python/2.7.11-intel-2016b Python/2.7.12 Python/3.5.2 Qhull/ Qhull/2015.2 Qt/ Qt/4.8.7-goolf-5.2.01 R/ R/3.3.1 SAMtools/ SAMtools/1.3.1 SIONlib/ SIONlib/1.6.1 SOAPdenovo2/ SOAPdenovo2/r240 SQLite/ SQLite/3.9.2-intel-2016b SQLite/3.13.0-goolf-5.2.01 SQLite/3.13.0-intel-2016b ScaLAPACK/ ScaLAPACK/2.0.2 Scalasca/ Scalasca/2.3 ScientificPython/ ScientificPython/2.9.4-Python-2.7.12 Stacks/ Stacks/1.42 SuiteSparse/ SuiteSparse/4.5.3 Tcl/ Tcl/8.6.4-intel-2016b ThetaDependencies/ ThetaDependencies/all Tk/ Tk/8.6.4-intel-2016b-no-X11 Trinity/ Trinity/2.2.0 UDUNITS/ UDUNITS/2.2.20-intel-2016b VCFtools/ VCFtools/0.1.14 Valgrind/ Valgrind/3.12.0 ViennaRNA/ ViennaRNA/2.3.1 WPS/ WPS/3.6.1 WPS/3.7.1 WPS/3.8.0 WPS/3.8.1 WRF/ WRF/3.6.1 WRF/3.7.1 WRF/3.8.0 WRF/3.8.1 WRFGeodata/ WRFGeodata/all WRFGeodata/3.8 XZ/ XZ/5.2.2-intel-2016b Xerces-C++/ Xerces-C++/3.1.3 Yasm/ Yasm/1.3.0 acml/gcc-int64/64/ acml/gcc-int64/64/5.3.1 acml/gcc-int64/fma4/ acml/gcc-int64/fma4/5.3.1 acml/gcc-int64/mp/64/ acml/gcc-int64/mp/64/5.3.1 acml/gcc-int64/mp/fma4/ acml/gcc-int64/mp/fma4/5.3.1 acml/gcc/64/ acml/gcc/64/5.3.1 acml/gcc/fma4/ acml/gcc/fma4/5.3.1 acml/gcc/mp/64/ acml/gcc/mp/64/5.3.1 acml/gcc/mp/fma4/ acml/gcc/mp/fma4/5.3.1 acml/intel-int64/64/ acml/intel-int64/64/5.3.1 acml/intel-int64/fma4/ acml/intel-int64/fma4/5.3.1 acml/intel-int64/mp/64/ acml/intel-int64/mp/64/5.3.1 acml/intel-int64/mp/fma4/ acml/intel-int64/mp/fma4/5.3.1 acml/intel/64/ acml/intel/64/5.3.1 acml/intel/fma4/ acml/intel/fma4/5.3.1 acml/intel/mp/64/ acml/intel/mp/64/5.3.1 acml/intel/mp/fma4/ acml/intel/mp/fma4/5.3.1 acml/open64-int64/64/ acml/open64-int64/64/5.3.1 acml/open64-int64/fma4/ acml/open64-int64/fma4/5.3.1 acml/open64-int64/mp/64/ acml/open64-int64/mp/64/5.3.1 acml/open64-int64/mp/fma4/ acml/open64-int64/mp/fma4/5.3.1 acml/open64/64/ acml/open64/64/5.3.1 acml/open64/fma4/ acml/open64/fma4/5.3.1 acml/open64/mp/64/ acml/open64/mp/64/5.3.1 acml/open64/mp/fma4/ acml/open64/mp/fma4/5.3.1 bcl2fastq2/ bcl2fastq2/2.18.0.12 blas/gcc/64/ blas/gcc/64/3.6.0 blas/open64/64/ blas/open64/64/3.6.0 bonnie++/ bonnie++/1.97.1 bwa.kit/ bwa.kit/0.7.12 cluster-tools/ cluster-tools/7.3 cmd cmgui/ cmgui/7.3 configurable-http-proxy/ configurable-http-proxy/1.3.0-intel-2016b-nodejs-4.4.7 cuDNN/ cuDNN/5.1-CUDA-8.0.44 cuda75/blas/ cuda75/blas/7.5.18 cuda75/fft/ cuda75/fft/7.5.18 cuda75/nsight/ cuda75/nsight/7.5.18 cuda75/profiler/ cuda75/profiler/7.5.18 cuda75/toolkit/ cuda75/toolkit/7.5.18 cuda80/blas/ cuda80/blas/8.0.44 cuda80/fft/ cuda80/fft/8.0.44 cuda80/gdk/ cuda80/gdk/352.79 cuda80/nsight/ cuda80/nsight/8.0.44 cuda80/profiler/ cuda80/profiler/8.0.44 cuda80/toolkit/ cuda80/toolkit/8.0.44 cutadapt/ cutadapt/1.9.1 default-environment dot fluka/ fluka/2011.2c foss/ foss/2016b freeipmi/ freeipmi/1.5.2 g2clib/ g2clib/1.4.0-intel-2016b g2lib/ g2lib/1.4.0-intel-2016b gaussian/ gaussian/g09.b01 gaussian/g09.d01 gcc/ gcc/6.1.0 gdb/ gdb/7.11 gettext/ gettext/0.19.8 gnuplot/ gnuplot/5.0.5-intel-2016b gompi/ gompi/4.1.10 gompi/5.2.01 gompi/6.2.01 goolf/ goolf/5.2.01 grace/ grace/5.1.25 grib_api/ grib_api/1.16.0-intel-2016b hdf5/ hdf5/1.6.10 hdf5_18/ hdf5_18/1.8.17 hpc-uniol-env hpl/ hpl/2.2 hwloc/ hwloc/1.11.3 icc/ icc/2016.3.210 ifort/ ifort/2016.3.210 iimpi/ iimpi/2013b iimpi/2016b imkl/ imkl/11.3.3.210 impi/ impi/5.1.3.210 intel/ intel-cluster-checker/ intel-cluster-checker/2.2.2 intel-cluster-runtime/ia32/ intel-cluster-runtime/ia32/3.8 intel-cluster-runtime/intel64/ intel-cluster-runtime/intel64/3.8 intel-cluster-runtime/mic/ intel-cluster-runtime/mic/3.8 intel-tbb-oss/ia32/ intel-tbb-oss/ia32/2017_20161128oss intel-tbb-oss/intel64/ intel-tbb-oss/intel64/2017_20161128oss intel/2013b intel/2016b intel/compiler/64/16.0.4/ intel/compiler/64/16.0.4/2016.4.258 intel/mkl/64/11.3.4/ intel/mkl/64/11.3.4/2016.4.258 intel/mkl/mic/11.3.4/ intel/mkl/mic/11.3.4/2016.4.258 intel/mpi/64/5.1.3/ intel/mpi/64/5.1.3/2016.4.258 intel/mpi/mic/5.1.3/ intel/mpi/mic/5.1.3/2016.4.258 iozone/ iozone/3_434 iperf/ iperf/3.1 ipmitool/ ipmitool/1.8.17 lapack/gcc/64/ lapack/gcc/64/3.6.0 lapack/open64/64/ lapack/open64/64/3.6.0 leda/ leda/6.3 lenovo-tools libX11/ libX11/1.6.3-intel-2016b libpng/ libpng/1.6.24 libtool/ libtool/2.4.6 libxml2/ libxml2/2.9.4 maple/ maple/18 maple/2016 module-git module-info motif/ motif/2.3.6 mpich/ge/gcc/64/ mpich/ge/gcc/64/3.2rc2 mpich/ge/open64/64/ mpich/ge/open64/64/3.2rc2 mpiexec/ mpiexec/0.84_432 mvapich2/gcc/64/ mvapich2/gcc/64/2.2rc1 mvapich2/open64/64/ mvapich2/open64/64/2.2rc1 ncurses/ ncurses/6.0 ncview/ ncview/2.1.7-intel-2016b netCDF/ netCDF-Fortran/ netCDF-Fortran/4.4.4-intel-2016b netCDF/4.4.1-intel-2016b netcdf/gcc/64/4.4.0 netcdf/open64/64/4.4.0 netperf/ netperf/2.7.0 nodejs/ nodejs/4.4.7-intel-2016b null open64/ open64/4.5.2.1 openblas/dynamic/ openblas/dynamic/0.2.18 openlava/ openlava/3.3.3 openldap openmpi/cuda/64/ openmpi/cuda/64/1.10.1 openmpi/gcc/64/ openmpi/gcc/64/1.10.1 openmpi/intel/64/ openmpi/intel/64/1.10.1 openmpi/open64/64/ openmpi/open64/64/1.10.1 path.py/ path.py/8.2.1-intel-2016b-Python-3.5.2 pgi/64/ pgi/64/16.5 sge/ sge/2011.11p1 shared slurm/ slurm/current slurm/16.05.8 stata/ stata/13 testpath/ testpath/0.3-intel-2016b-Python-3.5.2 torque/ torque/6.0.2 tree/ tree/1.7.0 util-linux/ util-linux/2.29-intel-2016b xbitmaps/ xbitmaps/1.1.1 xforms/ xforms/1.2.4 xorg-macros/ xorg-macros/1.19.0 zlib/ zlib/1.2.8 zoltan/ zoltan/3.83

If you want to create this list on your own, you can do this by simply using the command:

module spider