IGV and IGVTools
From HPC users
Introduction
The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
The IGVTools utility provides a set of tools for pre-processing data files. File names must contain an accepted file extension, e.g. test-xyz.bam. Tools include:
- toTDF
- count
- index
- sort
Installed version
The currently installed version of IGV is 2.3.80 and the version of IGVTools is 2.3.75.
Documentation
The full documentation of IGV and IGVTools can be found here.
