Difference between revisions of "IGV and IGVTools"
From HPC users
Jump to navigationJump to search
| Line 1: | Line 1: | ||
== Introduction == | == Introduction == | ||
The Integrative Genomics Viewer ('''IGV''') is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations. | |||
The IGVTools utility provides a set of tools for pre-processing data files. File names must contain an accepted file extension, e.g. test-xyz.bam. Tools include: | |||
*toTDF | |||
*count | |||
*index | |||
*sort | |||
== Installed version == | == Installed version == | ||
Revision as of 16:35, 3 January 2017
Introduction
The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.
The IGVTools utility provides a set of tools for pre-processing data files. File names must contain an accepted file extension, e.g. test-xyz.bam. Tools include:
- toTDF
- count
- index
- sort
Installed version
The currently installed version of IGV is 2.3.80 and the version of IGVTools is 2.3.75.
