Difference between revisions of "Gffread 2016"
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Schwietzer (talk | contribs) (Created page with "== Introduction == gffread is a GFF/GTF parsing utility which provides format conversions, region filtering, FASTA sequence extraction and more. == Installed version == The...") |
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Always remember: this command is case sensitive! | Always remember: this command is case sensitive! | ||
To get more information about | To get more information about how to specifically use the program, you can use the help funktion: | ||
gffread --help | gffread --help | ||
Latest revision as of 11:05, 17 January 2019
Introduction
gffread is a GFF/GTF parsing utility which provides format conversions, region filtering, FASTA sequence extraction and more.
Installed version
The currently installed version is available on the environment hpc-env/6.4:
gffread/0.9.12-foss-2017b
Using gffread
If you want to find out more about gffread on the HPC Cluster, you can use the command
module spider gffread
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env/6.4 module load gffread
Always remember: this command is case sensitive!
To get more information about how to specifically use the program, you can use the help funktion:
gffread --help
Documentation
For more information about gffread as well as about GFF and GTF files, you can visit this site.
