Difference between revisions of "FastQC"
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== Introduction == | == Introduction == | ||
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. | |||
The main functions of FastQC are: | |||
*Import of data from BAM, SAM or FastQ files (any variant) | |||
*Providing a quick overview to tell you in which areas there may be problems | |||
*Summary graphs and tables to quickly assess your data | |||
*Export of results to an HTML based permanent report | |||
*Offline operation to allow automated generation of reports without running the interactive application | |||
== Installed version == | == Installed version == | ||
Latest revision as of 15:58, 3 January 2017
Introduction
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are:
- Import of data from BAM, SAM or FastQ files (any variant)
- Providing a quick overview to tell you in which areas there may be problems
- Summary graphs and tables to quickly assess your data
- Export of results to an HTML based permanent report
- Offline operation to allow automated generation of reports without running the interactive application
Installed version
The currently installed version is 0.11.5.
Documentation
The full documentation can be found here.
