Difference between revisions of "Bwa-mem2 2016"
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Schwietzer (talk | contribs) (Created page with "== Introduction == Bwa-mem2 is the next version of the bwa-mem algorithm in [https://github.com/lh3/bwa bwa]. It produces alignment identical to bwa and is ~80% faster. [https...") |
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This version is installed and currently available on environment ''hpc-env/6.4'': | This version is installed and currently available on environment ''hpc-env/6.4'': | ||
bwa-mem2/2.0pre1-GCCcore-6.4.0 | bwa-mem2/2.0pre1-GCCcore-6.4.0 | ||
''' Please notice, that this is a pre version and | ''' Please notice, that this is a pre version and therefore it is very likely to be buggy! ''' | ||
== Using bwa-mem2 == | == Using bwa-mem2 == | ||
Latest revision as of 11:40, 22 October 2019
Introduction
Bwa-mem2 is the next version of the bwa-mem algorithm in bwa. It produces alignment identical to bwa and is ~80% faster. ¹
Installed version(s)
This version is installed and currently available on environment hpc-env/6.4:
bwa-mem2/2.0pre1-GCCcore-6.4.0
Please notice, that this is a pre version and therefore it is very likely to be buggy!
Using bwa-mem2
If you want to find out more about bwa-mem2 on the HPC cluster, you can use the command
module spider bwa-mem2
This will show you basic informations e.g. a short description and the currently installed version.
To load the desired version of the module, use the command, e.g.
module load hpc-env 6.4 module load bwa-mem2
Always remember: this command is case sensitive!
With bwa-mem2 --help you can get a technical overview.
Documentation
The project page can be found here.
