BamTools

Introduction

BamTools provides a small, but powerful suite of command-line utility programs for manipulating and querying BAM files for data.

Installed version

The currently installed version is 2.4.0.

Using BEDtools with the HPC Cluster

If you want to find out more about BEDtools on the HPC Cluster, you can use the command

module spider bedtools

This will show you basic informations e.g. a short description and the currently installed version.

To load the desired version of the module, use the command

module load BEDTools/2.26.0-intel-2016b 

Always remember: this command is case sensitive!

After loading the module, you can use the program with

bedtools <subcommand> [options]

Documentation

Further Information can be found on the project website.